G1562519


Basic Information

Item Value
gene id G1562519
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53279501 ~ 53288523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787751
ctccccctgtcctccgGGCTCTCCCTGCCCCTTTGCCTCACcctgtcctcctgtctccccctgcccCTTTGCCTGCTTCTGTGTTGCCAGCCAGTCACTGTCCAGTACAGGTATCCTCAACACCAGCAGCTTCCCCTCCTCTGGCTCCCCAGGGTGGTGGAAGGCGTGGTGATAGATGGAAGTACTAGGGGTGTAGATGCCGCTGCCCGTCATAGCCTTGCTGTCATGCCTGAGGTTAGCCGCCAGCAGAGTGACGTTAGCTCCCAGACTGACCGCTCTCTGGATCTGAACTGCTGTTAGTAGAGGAAGCAGATTCATCCAGGCTGTGGGGAAGATCAT
>TU1787752
ctccccctgtcctccgGGCTCTCCCTGCCCCTTTGCCTCACcctgtcctcctgtctccccctgcccCTTTGCCTGCTTCTGTGTTGCCAGCCAGTCACTGTCCAGTACAGGTATCCTCAACACCAGCAGCTTCCCCTCCTCTGGCTCCCCAGGGTGGTGGAAGGCGTGGTGATAGATGGAAGTACTAGGGGTGTAGATGCCGCTGCCCGTCATAGCCTTGCTGTCATGCCTGAGGTTAGCCAGTCACTGTCCAGTACAGGTATCCTCAACACCAGCAGCTTCCCCTCCTCTGGCTCCCCGGGGTGGTGGAAGGCGTGGTGATAGATGGAAGTACTAGGGGTGTAGATGCCGCTGCCCGTCATAGCCTTGCTGTCATGCCTGAGGTTAGCCGCCAGCAGAGTGACGTTAGCTCCCAGACTGACCGCTCTCTGGATCTGAACTGCTGTTAGTAGAGGAAGCAGATTCATCCAGGCTGTGGGGAAGATCAT

Function

NR:

description
biotinidase-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787751 False 339 lncRNA 0.59 2 53279501 53288523
TU1787752 True 488 lncRNA 0.59 2 53279501 53288523

Neighbor

gene id symbol gene type direction distance location
mturn LOC106588759 coding downstream 84492 53188075 ~ 53195009 (-)
LOC110496514 LOC106588757 coding downstream 91764 53183343 ~ 53187737 (-)
LOC110496850 LOC106588723 coding downstream 264203 52918684 ~ 53015298 (-)
LOC110496507 LOC106588754 coding downstream 373687 52900671 ~ 52905814 (-)
fbxl2 LOC106588753 coding downstream 420760 52838264 ~ 52858741 (-)
LOC110496518 LOC106588741 coding upstream 3890 53292413 ~ 53350447 (-)
snx13 LOC106588736 coding upstream 69206 53357729 ~ 53385541 (-)
LOC110496947 LOC106588730 coding upstream 104163 53392686 ~ 53395229 (-)
LOC110496852 LOC106588729 coding upstream 132583 53421106 ~ 53431824 (-)
LOC110496853 LOC106588795 coding upstream 228702 53517225 ~ 53530465 (-)
G1562522 snrpd1 non-coding downstream 100566 53175708 ~ 53178935 (-)
G1562576 NA non-coding downstream 132581 53141638 ~ 53146920 (-)
G1562568 NA non-coding downstream 162732 53116542 ~ 53116769 (-)
G1562567 NA non-coding downstream 163840 53112224 ~ 53115661 (-)
G1562566 NA non-coding downstream 169732 53107984 ~ 53109769 (-)
G1562623 NA non-coding upstream 43251 53331774 ~ 53339630 (-)
G1562624 NA non-coding upstream 65218 53353741 ~ 53394476 (-)
G1562701 NA non-coding upstream 201677 53490200 ~ 53491431 (-)
G1562682 NA non-coding upstream 221644 53510167 ~ 53511895 (-)
tomm7 NA non-coding upstream 335335 53621900 ~ 53628443 (-)
G1561279 NA other downstream 631724 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 922191 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1029012 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 1096294 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1824216 51381731 ~ 51455285 (-)
G1562762 NA other upstream 310127 53598650 ~ 53602694 (-)
G1562816 LOC100136012 other upstream 463883 53752406 ~ 53752683 (-)
G1562828 NA other upstream 585887 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 601186 53887137 ~ 53895002 (-)

Expression


Co-expression Network