G1561593 (LOC106588741)


Basic Information

Item Value
gene id G1561593
gene name LOC106588741
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53292431 ~ 53299970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786600
TTCGTTATCAGTCATTAAGAACATTGCACCAAATGTAGTCTTTAGACTTCTCTCCCCTGGCAACatttcacacacactcacgtttCCTTTCTCAGGTAGTGTAGAAACATTCAGGGTGTGAAGTGTTAAGACTGACGGTACCTTAGTGACTGAGGCCTTACTAACTCCTCTCCTGGAGGAATCGACTCTATgaatcagacagtaatgaatcaGACAATAGTAACTAGTATTATAACTCTTGAGATTCAGTGACTCGATTCAGTATTGACGCCGCATTAGGTGAACAGTGATAagttctgtctctgtttgtccatTATAATAAATGAAACTTAACTAGAATAAAACTAGTCTGGGTACTAGTCTGTTTAGCCATCATTCCACTCCTGTCATGCTAAACAGCTTTGGTATATGAATAAAATAATACAAGTAGTGGAATATTCACTAAACACACTGGTGCCCAGGCtagaacagactggtacccaggctagaagAAAACCCCTAAAGGAAGAGATCTGGAGATACAGAAATTAGAGATGTAAAGTCTGTTGGTCCGTTTGGCTAGGAttgtccctctgctctctccataCGTACAGCCCCAGCCCTTTCATTGTCATAGGGCAGATGTTTGGTAGCAAGAACCAATCCTAGAGGACTGGAGCTACCCACCCTTGCCACCCAGTCCAGAAGACGACAGTCCTCATTTTACTTTAGTATTAAACCTCTTCTTGGGAAGGGACGAGAGGACAGAATGTAGTGGAGTGAGTGGTTCAGAGAGTGGAGTCCTAAAATCCTGCCAAAGAGGAGGTGGGATATCCAAGGTAGGCGTGTCTTCAGTAGGTCTCAGAATCAGAGTCGTTAAACTCGTTATCGTCGTCGGGGGAAACGCAGAGTAGGCGGTCCTGCCTGCAGTAGGAGGTGTGGTCAGTCCTTAGAGGGGGAGGGGACTCAAATGCTACTCCTTTTGATTGGTGATTGGAGTAGTGATTGACAGATTGAAGTGTTGCCATCGTGACACGAGGGGAAGCAGGAAGCGTTGTTATGGAGACCAGGGGAGAGGCGGGCAGCATGGAGTTAAGAATGAGAGCGAGACAGTCGGCTACATCTCTGTTAGGTGCACAGGACAGGGCTGGAGTATAACCTGCAGCAGGCCAGGTAGGGTTCAGAAAACATGGGACATCAAATAAACTGGGACAGCTTCATCTGAAGTTTATTTCTTG
>TU1786603
TTCGTTATCAGTCATTAAGAACATTGCACCAAATGTAGTCTTTAGACTTCTCTCCCCTGGCAACatttcacacacactcacgtttCCTTTCTCAGGTAGTGTAGAAACATTCAGGGTGTGAAGTGTTAAGACTGACGGTACCTTAGTGACTGAGGCCTTACTAACTCCTCTCCTGGAGGAATCGACTCTATgaatcagacagtaatgaatcaGACAATAGTAACTAGTATTATAACTCTTGAGATTCAGTGACTCGATTCAGTATTGACGCCGCATTAGGTGAACAGTGATAagttctgtctctgtttgtccatTATAATAAATGAAACTTAACTAGAATAAAACTAGTCTGGGTACTAGTCTGTTTAGCCATCATTCCACTCCTGTCATGCTAAACAGCTTTGGTATATGAATAAAATAATACAAGTAGTGGAATATTCACTAAACACACTGGTGCCCAGGCtagaacagactggtacccaggctagaagAAAACCCCTAAAGGAAGAGATCTGGAGATACAGAAATTAGAGATGTAAAGTCTGTTGGTCCGTTTGGCTAGGAttgtccctctgctctctccataCGTACAGCCCCAGCCCTTTCATTGTCATAGGGCAGATGTTTGGTAGCAAGAACCAATCCTAGAGGACTGGAGCTACCCACCCTTGCCACCCAGTCCAGAAGACGACAGTCCTCATTTTACTTTAGTATTAAACCTCTTCTTGGGAAGGGACGAGAGGACAGAATGTAGTGGAGTGAGTGGTTCAGAGAGTGGAGTCCTAAAATCCTGCCAAAGAGGAGGTGGGATATCCAAGGTAGGCGTGTCTTCAGTAGGTCTCAGAATCAGAGTCGTTAAACTCGTTATCGTCGTCGGGGGAAACGCAGAGTAGGCGGTCCTGCCTGCAGTAGGAGGTGTGGTCAGTCCTTAGAGGGGGAGGGGACTCAAATGCTACTCCTTTTGATTGGTGATTGGAGTAGTGATTGACAGATTGAAGTGTTGCCATCGTGACACGAGGGGAAGCAGGAAGCGTTGTTATGGAGACCAGGGGAGAGGCGGGCAGCATGGAGTTAAGAATGAGAGCGAGACAGTCGGCTACATCTCTGTTAGGTGCACAGGACAGGGCTGGAGTATAAcctaggggggagagagagagagaaagagggtgtgtgtgaatgtgtgtgcaggGCAGGCCCCCCATTAGGCAGCAGATTGACGAGGGCGTCATTTTCCAAGGTAAACTGACCAATACACACCTACAACACCTATAACACCACACATAATTCTGCCCCTAAACAATGAAAACTTCCCATCCAGTGGGATATGGGCTATTAAAGGGAGTGCTGATGCAGGGCCATGATAAGCagtacccactttgccaaaggcaGGGGCGCAAAATATGTATCTTGCCCATCGAGTCTCATCATGGTGCAAGAGACGCTGCGCCAACAATGCTCTGTCAATGTCATCTAACATATCATGCAGGCTAGTCCAGCGTTTCCCAACCCTCTCCTCGGCCCCccggacatttcacatttttgttttaaccctAAACTGGCACACCGGATTCAATTAGTCAAAGgattgatgattagttgaataaaTGAATCAGGTTTTCCAGttaaaatgtgaaatgtctggaGTGGCCTGAAGAGAGGGTTGGGAGACCCAGTGGCCTTTTCTGGAGCCTACAGGCAGACCAAATGTATGACAATGTCATGAGAAACTTTTTAGGCCTACATATGTGTTTCCAAATCAATAGCTAATCATGATAATTAGCGATTTCAAGTTTTTAGCTCTATTCATCAATTTGTAAGCTGACCATGGCTGAGAAGAAAATAAACTGCATTTTCCAATATAATAAGATGCTTGATAAAGTTGGAACAGTTTCCTTCGATAATAACGTTttgtttctcaaaatcattgtcacgtgGTTAATAATACAATGAATTAAAATACAAATCTAAAATTCAACTACTGCGAGATcaccagcctctgccatatgTATGGACATTGATACACCGTGAGCTATTGGCGGCTAAAGAAATGAGCGTATGGAACTCAGATTGCTTATAGGCCAAagcagcagtactgtaggccTATAACTTTCATTGCCAACTAAGTAAAAATACATAAAGctgacaaataaaaacattaataAATATCCTGGTGAAAATGCAGGTTCTTTCAATCGCATTCAACTCTctactctgcctgtctgcctccctttctatcGGTCATGATTTGAGCATTTGCTAGTAAAGTGCAACATTGTATAGAATCAAATTGGGTCTGTCCCAAAGGGGTCACTATAGCTAACTTGCAACAACTAGCTGGGCCCTAAGAGTTTCTTGCGCCAGTGAGCTTGGGACGGACACAGCTGTTTTTGGGCAAAGGAAAAGTTCTCAGGTATTTTACGATGTTTCCACTGTATATGTGGGATCCTCCGAGCATGACATTTTCCTCTTTCATACGGAGGCTTGGTGATTATGGAGGGGGAGAGTGTTGGACAtaatttttttgtatatattggagaccgattttcatgcaaatatgcTCAAATTTACGTAGGCCAAAGAAATGAGCGCATTTTCTCACCACAGAATAATTTCCATCAAATTAACTTGTTGCGGGTAAAAGACTGACCGTGCACATAccttttgcggttaaattcccatgtaccgaataaaacaTTAGAAAGTTAAATGGATTTCCATCACATGTTTGACTCTACTGATGGTTTACTCACAAAGCATGTTGTGTTATGTAcagtgtgcccactctggtattggcacgtgcgctctagccaacagctcacggTCACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATAGCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACATGCTGAGATTAGACACAGTGCGGGTATAGCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACATGCTGAGATTAGACACAGTGCGGGTATATCCTACACGCTGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACGATGAGATTAGACACAGTGCGGGTATATCCTACACAATGAGATTAGACACAGTGCGGGTATAGCCTACATGCTGAGATTAGACACAGTgcgggtatagcctacatgatgagattagaCACAGTGCGGGTATATCCTACATGCTGAGATTAGACACAGTGCGGGTATATCCTACATGCTGAGATTATTATACACAAAAGAGcgaaattatttttatttgtcaaatgggaGCCaagcaatgcaaaaaaaaaaatgcatcgaTGATCATGTCAACAGAATAAGACCcttaatatttattggaaaggagcgtcaaactcatcaccttgcactttcaccggCCTatgtgggaggaccacacagcctgtcatcgcgtgactccaagtttacatCGATATGATGGGTTATTATAGCAATATTTGTGCCGATATTTCTCACATAATTCATTTTACCCActcaaaaagatcccaccttgtcgagggcattttgttttgtcgacatttgcaAAGTTTACTGACATATTTTCTGTTTCCATCGGGCCGGTCATGTAATTTATTTTATCCAAGATGTACTTTACGGGCATAAAAAGGTTGGCTGGAAACATGATTTGTGAGTAACTATTATTGTTCACAATGGATACAAAATAAAAAGGCTTGACTTACTGTGGTGGTGATTTACAGCTGCAATGTTACTTTTTGGGCAACCACCAAATTCACATAAAGGTGAGTTATAGAGCTGTCATTCTTcactgaaagcaagtctaagaagcggtagatattttctgtgtgtgctatttctatgcttcccattcttaaatTTAGTTTTTGCATCTAACTTTCAGTTttctacaccagcttcaaacagctgaaaatacttatttttggttatgaaaaacatatttcacagcagttCAGATGGTACAATCattcttgttttgtcacaaacagaAATTAGGCGAGctatttgaattttagcaacAAGGAAACAGCAGAGAATTTCTGCGTAGTGCAGCTTTAAAGACTAAAGATCTgacatccccaaatgggcactttCCTGCAGCAGGCCAGGTAGGGTTCAGAAAACATGGGACATCAAATAAACTGGGACAGCTTCATCTGAAGTTTATTTCTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786600 False 1217 lncRNA 0.46 2 53292431 53299970
TU1786603 True 4427 lncRNA 0.43 2 53292431 53299970

Neighbor

gene id symbol gene type direction distance location
LOC110496851 LOC106588750 coding upstream 3806 53287015 ~ 53288625 (+)
sh3bp5a LOC106588751 coding upstream 17375 53198538 ~ 53275056 (+)
ggcta LOC106588758 coding upstream 108937 53180891 ~ 53183494 (+)
snrpd1 snrpd1 coding upstream 113493 53175661 ~ 53178938 (+)
LOC110496511 LOC106588739 coding upstream 118441 53141523 ~ 53173990 (+)
LOC110496948 NA coding downstream 104695 53404665 ~ 53406505 (+)
itgb8 LOC106588794 coding downstream 197751 53497721 ~ 53514974 (+)
LOC110496949 LOC106588787 coding downstream 318852 53618822 ~ 53621390 (+)
klhl7 klhl7 coding downstream 356256 53656226 ~ 53663553 (+)
LOC110496530 LOC106588804 coding downstream 375523 53675493 ~ 53703310 (+)
G1561562 NA non-coding upstream 155905 53135743 ~ 53136526 (+)
si:ch211-199g17.2 LOC106588746 non-coding upstream 241160 52996763 ~ 53051271 (+)
G1561433 NA non-coding upstream 250592 53038951 ~ 53041839 (+)
G1561511 NA non-coding upstream 271902 53019742 ~ 53020529 (+)
G1561478 LOC106588754 non-coding upstream 388371 52900686 ~ 52904060 (+)
G1561723 NA non-coding downstream 195427 53495397 ~ 53495714 (+)
G1561712 NA non-coding downstream 221494 53521464 ~ 53524347 (+)
G1561739 NA non-coding downstream 239804 53539774 ~ 53541773 (+)
G1561745 LOC106588797 non-coding downstream 253328 53553298 ~ 53553592 (+)
G1561769 NA non-coding downstream 286400 53586370 ~ 53587352 (+)
G1561544 LOC106588750 other upstream 3966 53277790 ~ 53288465 (+)
G1560957 NA other upstream 850490 52441146 ~ 52441941 (+)
G1560911 NA other upstream 936596 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1034901 52256636 ~ 52257530 (+)
LOC110514975 LOC106588804 other downstream 418399 53713836 ~ 53730416 (+)
G1561845 NA other downstream 517194 53817164 ~ 53840871 (+)
G1561856 NA other downstream 572203 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 1209788 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1838678 55138648 ~ 55139231 (+)

Expression


Co-expression Network