G1562624


Basic Information

Item Value
gene id G1562624
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53353741 ~ 53394476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787875
ggtgtgtgtgtgtgtatatatatatatatatatatatatatgggtctGACTTGTACTGTAATCTTTTAAACAGCAGAAGACAGATGaggaaatagagacagagaatggGCCTGCAGTGTCAACCACATCCGGTTCTGCAAGGCGTTTTTTCacgtttttgttattttgtgttttttttttacacaatgtGACATCCATGCCTGCCATAATCCTTTCACACAGGGAGGCAGGGTTTGGCCTAAAGGCCATTTCCCATTTTTAATGCACCGGTCAGTAGCCATGACAACCAAAGCCCtagctgtttgtgtgtctgtgtctcgaCAGGCATGATAGAGACAGCTCTAGTCTACTCACTGTGCTTCCTATTGTTAATCATGTGAAAGAAGAAGAAACCAGAATGCACAGCTCACCTGCTTTCTCTAGAGCTGAGACCAGGGTAAATTtgaaatggcaccccattctagtgcactgcttttggaCAGACGGATCCTAATAGTAGTCCACTTTTATAttaggaatatggtgccattttggacggaGCCAGAATGAAATGAAACAGGCCAGACCGTGTGAATGTTGCCGTCTGTGGAGGTGACTTGTCTGTCGGGTATCTACGCATACACAGGTATGCCTATTAGAATGTACTCTGtgggtcctgtctgtctgtgttaggtCTTTCAGAGGtttttgtgtgtttctgtgtgtttgagtgtgtagcAGTAAGATGCAGCCCTCCCCAGTCAGACACTGTGCCAGTGTGAGCTTTAGTGAAGCAGCCTTAATACAGACTAAGAGACCATGCTATAGTAacgctctctcactcacacacacacacacacactcgcagcaCTACGTTACAAAGAGAAAACCCACTGATATCCCTACTTAATCACACTTTTATTGTCATTCATTTTGTGCAATATTTTTCTTTAATGCATGTGTATTTGAATAACTGTATATTGTATAAAATGTAAACTAAAATGTTTTGAAAAATTGTAGAAAAGGTGAAAGAATTCTCCCCCTTCCCCAAAGAAAAAAAGTATTCTAACCCCAACAACCTACATTccgatgtttaaaaaaaaaaatttttatttCGACTTGTTTTATAAGTctgtttttgggggggggtttctCACTCCTGATGAATCTGTGGTTTCCGTGCTGATGTGTCAGTAGCAGGAAAGAGGAGTGATCGAGCTAAAGCGTCTGGATAGAAAGCTAGCTCATTGGTCTAGCAATATAGGAGAGGGGCTTATTATCCATTTGAGCCTGTTTGGAGCGTAAACAAAAATGACATCCTGTTAGATGAACCGATAACAGGAGAGACTTTGTCATCTGACCAATCGAATTGCAGGAATACTGTGTTCCTGTGAACCAATAGAATCACTGCTGAAGAGCACTTACTACCCGAGTTCTTCCATTGGCCGAACAGAGCTCCATTCCACTGCTGCCATTGGATGGAACTGTCCCTCGTCTGCTGTGATTGGCTGGCAATGAGCAGCTCTTGACTGTGATTGACAGCGTGAGGACATTAACTCTAAGCTGTGACACCTTTTTAAAGGGAGGTGGATATTTGTCCCTGGACTGGAGAGTTGACCAGGGGAACCCCATAGGACTTCACCTTAAAAGCCTCCACACTCCTCCTGTTCAAGATGGCTTGGCTGTTGATGTTTTTTAATCCCTTGGGGACAGGTTTTCATAGCGTTTACCTCACATCAACATGATCCTGTGTTGTATAAATCATGAAATGAATGGGAACAGAATCTAATGGGTGAACACAATGAGACAACACGGCCTCATGTAGATTTTGATGAAACGTTGCTGTGAAAAACTGGGATCTCCTAGTACATTATGAATCTATGATAATGAACCGTGTGCATATCTGTGTACAGTACGTGTCTATAGTGTGCCTAAATGTCTGTCAACTCTATTTTCATATTTTTCTTTAACAAAAGATAAAGATCAAACAGAATGTCATGGTCATTTTAGACTGAAAAGAACTCAAGACTCTAGAACCAGAGAAATCTAAAGATTTTAGAGCCAGGGGTGGGTTTTAGACTCTAGAACCAGGTGTggccaaccctcttcctggagaactactggcTTTTGCTTAAACCCTGCTCTGTTCTAATACACCCAATTTAGCCAATCAAGGTCTCGATGAGGAGCAGCTGAAccaggtgtgttagagcagggctgGAGAAAAATCCTgcacaggagggtagctctccaagaGCAGAGTTGGAGACCCCTACTCTGTGGTGTTTCTTGCATCATGCTTATCAAACTATTCCTTTGGAGACGCTGAACTCCGATCAGTATAACACTAATAATAAAATGATAACTAACTGA
>TU1787877
CCTCTGGTCTCTGCAGGAAGATCGTTGATCATGTGGACTTCATGACAGCTCCAGAACAGGTGGCAGACTACGTCAAGAAGTTCAggtgacagacacagacacacacacacacacactattagaTTGCTGTGTGTGATTGGTTAGAAGGTAACTCTCTGTGGTCCCGTCCCTGTGCAGGGATTCATACTGGCCCAACGGAATCCTAGCAGAGTCTCCACCCCGCCGGGACAAGAACATCCGCATGAGGACACGGGTCGCCGCCAAGACCAACCTATTGGGAATCATGCCAGaTGAGTTGAAGCACATCATAGGGGCGGATACGACTCGTAAAGGCATCCTTCGTGTGTTTGACATGTTCCAACACGGACCAATGAATCGTCGGCTGGTCTACGTGCTCCTAGAAGGATTCCTGGAGACCATGTTCCCTCAGTACAAGTTCCCAGAGCTGTTTGTCAAACTGCATTCCCGTTCGCCGCGCACGGCCAGATATACACAGAAACTCAAGAGCACCTCCCTGAAGAGGTGACAGGAGACTGGGATTGGGCAGGGTACTTGGTGACACACACTCGCTCACACGCCgtgagagaacagagggaggaggggagtagtggggagggtgtgtatgtgtgctggtgAGAAGAGGTGTGCGTGTCCTTCTTTCTATGTCAAGAGGTGCTTTTTGGGCCATCCGAGCACTTaactcttccctcctctcccctacatgcctctcacactctcctctactcactcacacacacaccctcctgtgCACACTTTAGAGACCGcatttgtgttttattttatttttgtactttttacTTCCTACTAAACTATTTTATTGTAGATGTGTGGTCAGACTGACAGCTGCTCTGATATACACAGCAGCTGATCTCCGTTACTGATACCAGAGAGCAGAGCTATGTATAGAGAAATACATGGGTCGTTCCATGTAATGAGCCCCTTTTGGgtagtgtttcccaaactcggtcctgggttCACAATTAgttttttttgccctagcactacacagctgatttcaagtaatcaaagcttgatgatgagtttatTAATCATctttgtagtgctagggcaaaaaccaaaacatgcaccccttaAGGTCCCGAGAACCAAGTTCTGGAAACGCTGGGTTAGAGTAATTTGATGGGAAAGAAATGTAGATTTAATGAAGAGCATATTTTCAACCTAATAAAAAGCATagtttcccatctcaagaggttaaagaaAAGAATaactgggcggcaggtagcctagcggttaagagcattgggcaagtaaccgaaaggtcactggttggaatccccgagccgactaggtgaaaaatctgtcggtgCCTTTTAAGGGCAATTAACCATCATtgttcctgtaagtcgctctggataagggtgtctgctaaatgactaaaatgaagAAACAAAGATGCTAAATGTAAGTGCCagataaagtaacagggttgaccgtaacagggttgaccgtaacagggttgaccgtaacagggttgaccgtaacagggttgacgatttaaCCTTCAATCAGCCTTAAATCCCTTGTGACCGGGGGAATGGAAGGCtcttgtgtgcaacagggaggggcaattgaatgccAGCTTCACAAAAAACAATTCATTCTTAAAACATTTTTAGCCtttctatctatgggtaacagggttgacatgttatgctcaacccactcagttttccaccacaaaacgaGACAAAATGGCAAAAAAGAGTATAACCAGCTCATCTGCTTTTACATTATTTTACTGTTAAATGTTCAATTTTTCtcttgaatttaaaaaaaagaataggCTAGTTCATTTGACAGGGTTTACCTGAAtgaatcacattaaataaatactCTTCACAaattacattgtcaaagcaacaatATAACTTAGGCTTCACAGTGATGGTGAAAACATGGAGAAATGTTGGGGTTAACATCTTCCTGGAAGTCACAGAGAGTGCACGGAGGGACATGGCAAAATGCAGAATTGTGGCACTTTAGTAAGTCTATTCatattcaaaatcaaatgtattgaatTGTCCATGTGgtcacttcatttaatataacaggcttttaaagatgcactatgcagaaattgatctgccatttcctggttgcgcaaattctaatagttcgcctaatttcagtttgtgacgaAACAAGCAAGTACAGGGAAGAGAATCATTGTACTATGTAAACCGCCGTGAAATAGCTTTTCgataacccaaaatattgtattttcagctgtttgacgcTGGTGTACAAAAAAAAACGAATGTAAAAGTTGCTAAAAGAAACTTAAGACCGTGAAGCATAGAAATAACCCACATGGAACATATATACTGCTTctaagacttgctttcaatgagtgacagatctataactcatatttctgtgtgaatttggtcgggtcgcccaaaaagtaagatattgcagctttaaaaatCAATATTGCCGCACAATTTCTACTAcaaatatcaaagggatgcaaaagggACTCATTGCGTAGAACGACCCACATAGGTTGAATGGCATAtgttgtgtatatactgtacctgtacatagaaatagaatgaatagattc

Function

NR:

description
sorting nexin-13-like isoform X5

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787875 False 2352 lncRNA 0.42 2 53353741 53394476
TU1787877 True 2611 lncRNA 0.43 2 53356145 53358835

Neighbor

gene id symbol gene type direction distance location
LOC110496518 LOC106588741 coding downstream 3294 53292413 ~ 53350447 (-)
mturn LOC106588759 coding downstream 158732 53188075 ~ 53195009 (-)
LOC110496514 LOC106588757 coding downstream 166004 53183343 ~ 53187737 (-)
LOC110496850 LOC106588723 coding downstream 338443 52918684 ~ 53015298 (-)
LOC110496507 LOC106588754 coding downstream 447927 52900671 ~ 52905814 (-)
LOC110496852 LOC106588729 coding upstream 26630 53421106 ~ 53431824 (-)
LOC110496853 LOC106588795 coding upstream 122749 53517225 ~ 53530465 (-)
LOC110496522 LOC106588796 coding upstream 137446 53531922 ~ 53537779 (-)
LOC110496523 LOC106588797 coding upstream 145255 53539731 ~ 53597146 (-)
tomm7 NA coding upstream 229242 53621900 ~ 53628443 (-)
G1562623 NA non-coding downstream 14111 53331774 ~ 53339630 (-)
G1562519 NA non-coding downstream 65218 53279501 ~ 53288523 (-)
G1562522 snrpd1 non-coding downstream 174806 53175708 ~ 53178935 (-)
G1562576 NA non-coding downstream 206821 53141638 ~ 53146920 (-)
G1562568 NA non-coding downstream 236972 53116542 ~ 53116769 (-)
G1562701 NA non-coding upstream 95724 53490200 ~ 53491431 (-)
G1562682 NA non-coding upstream 115691 53510167 ~ 53511895 (-)
G1562729 NA non-coding upstream 308616 53703092 ~ 53730527 (-)
LOC110496534 NA non-coding upstream 309289 53703762 ~ 53705633 (-)
G1561279 NA other downstream 705964 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 996431 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1103252 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 1170534 52179320 ~ 52240648 (-)
G1560339 NA other downstream 1898456 51381731 ~ 51455285 (-)
G1562762 NA other upstream 204174 53598650 ~ 53602694 (-)
G1562816 LOC100136012 other upstream 357930 53752406 ~ 53752683 (-)
G1562828 NA other upstream 479934 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 495233 53887137 ~ 53895002 (-)

Expression


Co-expression Network