G1562682


Basic Information

Item Value
gene id G1562682
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53510167 ~ 53511895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787945
CTTACCAGTGTGACTGACAGGAGCTGTGGCAGGTGGGACATCTCTCACAAAATGCTCCGGAATATTGATGGTTGTCACACACAcatctgccacacacacacctgccacgCCCGCTGCATAGCAACCCGTTGTCGGACAGGCAGATTGCCGTAGAGACTGGGCACCTGCAGCTCTCTCCTGTCCAGCCCTCTTCACATACACAAtcaccagacacacacatacctcgccctgaaggagagagggagagagagagattgtagtCTACCACCTGTTACAGTGTGAGTAAGTGAATAAGATTTAGCTCGTAAGATGTGAAatgtacattgtgtgtgtgtgtgtctgtgtgtgcacaacgtgtgtgtgtattacctCCACACAGTAGTCCGTGTTGGTAGGGGCAGGAGTAGTCGTCCATCTGACAGTACTGTCCATACACTGTTCCTAGACTgttcctctcacacacacacttcccacacacacacactccccgacCGTTACAGTCCACCCCCGATCCCTCCGCACGACACTGCCGTGACCACTCCGGTCCGTGTGTGTGAGGGCGTGTGGGTGTGTGCTCTGGGTCTaggtccggtgtgtgtgtgtgagagcgtgtggGTGTGTGCTCTGGGTCTaggtccggtgtgtgtgtgtgagggcgtgtGGGTGTGTGCTCTGGGTCTaggtccggtgtgtgtgtgtgcatgtcccgATTGTTCATGTCTTGATTATTACGGTCTGTATCTGGGGTGACCTCACCACACGTTGACTGATGTGTGGTATCGTCGTGGCAATGCCAGTCCGGTCCACAGTGACAGCGACATCGTGAGTGAACCTTGATGATGGATGACTCATTGTAACCCACGGGCCTGACGAAGACCTGGACcacgtcatcatcatcatcgtcaggACAGGAGTGCAGACCGATGGTGATGTTGAAGTAGAcctcgtctGGTTGGGCTGGACGTTGGAGCAGCTGCGGTTGTCGTGGGATACAGATCCTTccggacagagaggagagacgctGACCAGGAAACGGCTGAATGCTCTGTCCTCCACTGACACAGACACCTGGACAACTGACAACAACCTCTAGAGgagacagatggaaagagagtggtggaaagagagagagagtgagagagagtggtggaaagagagaga

Function

NR:

description
integrin beta-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787945 True 1161 lncRNA 0.54 3 53510167 53511895

Neighbor

gene id symbol gene type direction distance location
LOC110496852 LOC106588729 coding downstream 78343 53421106 ~ 53431824 (-)
LOC110496947 LOC106588730 coding downstream 114938 53392686 ~ 53395229 (-)
snx13 LOC106588736 coding downstream 124626 53357729 ~ 53385541 (-)
LOC110496518 LOC106588741 coding downstream 159720 53292413 ~ 53350447 (-)
mturn LOC106588759 coding downstream 315158 53188075 ~ 53195009 (-)
LOC110496853 LOC106588795 coding upstream 5330 53517225 ~ 53530465 (-)
LOC110496522 LOC106588796 coding upstream 20027 53531922 ~ 53537779 (-)
LOC110496523 LOC106588797 coding upstream 27836 53539731 ~ 53597146 (-)
tomm7 NA coding upstream 111823 53621900 ~ 53628443 (-)
fam126a LOC106588800 coding upstream 116971 53628866 ~ 53649839 (-)
G1562701 NA non-coding downstream 18736 53490200 ~ 53491431 (-)
G1562624 NA non-coding downstream 115691 53353741 ~ 53394476 (-)
G1562623 NA non-coding downstream 170537 53331774 ~ 53339630 (-)
G1562519 NA non-coding downstream 221644 53279501 ~ 53288523 (-)
G1562522 snrpd1 non-coding downstream 331232 53175708 ~ 53178935 (-)
G1562729 NA non-coding upstream 191197 53703092 ~ 53730527 (-)
LOC110496534 NA non-coding upstream 191870 53703762 ~ 53705633 (-)
G1562730 NA non-coding upstream 222275 53734170 ~ 53743453 (-)
LOC110496535 NA non-coding upstream 226448 53738342 ~ 53741052 (-)
G1561279 NA other downstream 862390 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1152857 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1259678 52249354 ~ 52250489 (-)
trak1b LOC106588779 other downstream 1326960 52179320 ~ 52240648 (-)
G1560339 NA other downstream 2054882 51381731 ~ 51455285 (-)
G1562762 NA other upstream 86755 53598650 ~ 53602694 (-)
G1562816 LOC100136012 other upstream 240511 53752406 ~ 53752683 (-)
G1562828 NA other upstream 362515 53874410 ~ 53875592 (-)
mrpl3 mrpl3 other upstream 377814 53887137 ~ 53895002 (-)

Expression


Co-expression Network