Gene
RNA
| Item | Value |
|---|---|
| gene id | G1561712 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 53521464 ~ 53524347 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| transcription factor Sp4-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1786747 | False | 515 | lncRNA | 0.42 | 2 | 53521464 | 53524347 |
| TU1786748 | True | 452 | lncRNA | 0.43 | 2 | 53521464 | 53524347 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| itgb8 | LOC106588794 | coding | upstream | 6490 | 53497721 ~ 53514974 (+) |
| LOC110496948 | NA | coding | upstream | 114959 | 53404665 ~ 53406505 (+) |
| LOC110496519 | LOC106588750 | coding | upstream | 214338 | 53277785 ~ 53307126 (+) |
| LOC110496851 | LOC106588750 | coding | upstream | 232839 | 53287015 ~ 53288625 (+) |
| sh3bp5a | LOC106588751 | coding | upstream | 246408 | 53198538 ~ 53275056 (+) |
| LOC110496949 | LOC106588787 | coding | downstream | 94475 | 53618822 ~ 53621390 (+) |
| klhl7 | klhl7 | coding | downstream | 131879 | 53656226 ~ 53663553 (+) |
| LOC110496530 | LOC106588804 | coding | downstream | 151146 | 53675493 ~ 53703310 (+) |
| LOC110514975 | LOC106588804 | coding | downstream | 189489 | 53713836 ~ 53730416 (+) |
| LOC110519664 | LOC106588805 | coding | downstream | 287736 | 53812083 ~ 53882492 (+) |
| G1561723 | NA | non-coding | upstream | 25750 | 53495397 ~ 53495714 (+) |
| G1561593 | LOC106588741 | non-coding | upstream | 221494 | 53292431 ~ 53299970 (+) |
| G1561562 | NA | non-coding | upstream | 384938 | 53135743 ~ 53136526 (+) |
| si:ch211-199g17.2 | LOC106588746 | non-coding | upstream | 470193 | 52996763 ~ 53051271 (+) |
| G1561739 | NA | non-coding | downstream | 15427 | 53539774 ~ 53541773 (+) |
| G1561745 | LOC106588797 | non-coding | downstream | 28951 | 53553298 ~ 53553592 (+) |
| G1561769 | NA | non-coding | downstream | 62023 | 53586370 ~ 53587352 (+) |
| G1561792 | NA | non-coding | downstream | 76944 | 53601291 ~ 53602252 (+) |
| G1561788 | NA | non-coding | downstream | 118877 | 53643224 ~ 53649838 (+) |
| G1561544 | LOC106588750 | other | upstream | 232999 | 53277790 ~ 53288465 (+) |
| snrpd1 | snrpd1 | other | upstream | 342527 | 53175661 ~ 53178938 (+) |
| G1560957 | NA | other | upstream | 1079523 | 52441146 ~ 52441941 (+) |
| G1560911 | NA | other | upstream | 1165629 | 52355297 ~ 52355835 (+) |
| G1560811 | LOC100846955 | other | upstream | 1263934 | 52256636 ~ 52257530 (+) |
| G1561845 | NA | other | downstream | 292817 | 53817164 ~ 53840871 (+) |
| G1561856 | NA | other | downstream | 347826 | 53872173 ~ 53876930 (+) |
| LOC110496545 | LOC106588816 | other | downstream | 985411 | 54412770 ~ 54510923 (+) |
| G1563547 | NA | other | downstream | 1614301 | 55138648 ~ 55139231 (+) |
