G1561739


Basic Information

Item Value
gene id G1561739
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53539774 ~ 53541773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786778
TATTCATACATAATCTCCAGTAAAACTTTGACGTAGTAAACCTCTCTTTAGAAAAGACGTGTGGCTTCAGCAGTTAGGGACGGGGAACATACTGCTCTGCCCTTTCCTTTCTCCCGCTGTGTATGGAGACATCATGTTGTGGAAAGTAGGCCTACCTTTAAAACAGATAAATAATTACACCTCAAACATCATAATAACATTATGCATATTTACAAATCAACAATATTACAGTGGTATAAAGCCTTAGAGAAAATctgaaatggcacactattccctggcttatatagtgcactacttttaaccagagctccctattccctatatagtgcactacgtttgactagGGCCTcatagctctggtcaaaagtaatgcactatataggaaataggatgcaatttgggacacactcTTAGTGTCATCTTGCATTGTGATCTGGTGGGGTTGTCACGTCATGCAAACAACAACATTCTTTAAAACAGAACTTTACATCCTCATGGCAAGAAAACAACAACACCCGTCTCTTCTTCATTCATcttttttctccccccccccattTTGAAATCACATAGGACAGTAACAATCCCTGGACCAACTCCACTCCCTAGTCTCCTGTTTTAAACATTACAGCATTTCAGCTCAACCAGCAAACCTTTTGGACACAGTTCAATGTATTTACACATATGTCCTGCAAATCTTTACCGAGGTCTGTCTTTATACAGCTCCGGTGTGATATGGCACACAGGACTGTCACATTCTGTAGAGaaatataaataaacaaaatattacAATAAATAGTTATATAGCACTACTGCCCTGCTTCTACACACCTGAACACTGTACATGTGATGAACTTGATCAGTCAGTGTGAATACCACAGGCCTTAACAGTGATGTACTTGATCAGTCAGTGTGAATACCACAGGCCTTAATAGTGATGTACTTGATCCGTCAGTGTGAATACACCAGGCCTTAATTAACAGTGATGTACTTGGTCAGTCAGTGTGAATACACCAGGCCTTAACAGTGATTTACTTGATCAGTGTTGAATGCATTGACTGTGTTTGAACCAAGGCAATGTTGCCTAGTGAAATCTGTGTGTAACAGGCATTGAAACCGCTCTTCAGTCAGTAAAAGtgtaataacaatgtaataaTAATCTCTATAATACCGTGGTATTACCGCCCAATAACAATGTGTAATAGTAGGACCTTTATGTTGTGGTATGACAGGAGCAGAAATGATGAGGGCTTTGTGGTTTCTACAGATACAAATAAAAAGGGATGTGTGTAATCTGTATATggcatctctcccccatccggaCATTTGGCACTGTCATCCAGAGGCATATCTCACCATGTGGcctgaacacatacagtatacatctGCTGTACGTCTACTGCATGATTTCCAGTCATATACTAACAGTTACTATCTACAGTCTTTTGACTGTTTCCCTACTGAGGATCATTCATATACAATGAAACTAATTGTTAACTTAAGACCAGAAACACAATCTCAGTAACTGTACAAACTCCTCTGGAGAGTAGCTTAAAAACAGTATTCATGACAGAACAATAAAGAATGGCCGTCTGTCTTCTCCTTGGTCTTTGTCGTCCGTCAAAGGTTGACCTTCATAGAAAAACAGTCTGAATCAGGTTGACAGATATACATTTTCAGTCTGAACGCCGTCTCAGTGTGCAGCTCTGTGGTTGGCTGGCTGAATCAGGATGCTGAACTGTGATTGGCTAAGAGCCGGGTGGCTTGCATGGCACCTTCAACACAAAgtgtattttctgtgtgtgtgttcaggcgcGAGGCTCCAGCTTGTGTGACAGTTGGAACAGTGTCTGTTGATTGTCGATGATGTGGAGGTAGTGAACGCTCGCCCTGACCTCTGCACTGTCGCTCCCCA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786778 True 1912 lncRNA 0.41 2 53539774 53541773

Neighbor

gene id symbol gene type direction distance location
itgb8 LOC106588794 coding upstream 24800 53497721 ~ 53514974 (+)
LOC110496948 NA coding upstream 133269 53404665 ~ 53406505 (+)
LOC110496519 LOC106588750 coding upstream 232648 53277785 ~ 53307126 (+)
LOC110496851 LOC106588750 coding upstream 251149 53287015 ~ 53288625 (+)
sh3bp5a LOC106588751 coding upstream 264718 53198538 ~ 53275056 (+)
LOC110496949 LOC106588787 coding downstream 77049 53618822 ~ 53621390 (+)
klhl7 klhl7 coding downstream 114453 53656226 ~ 53663553 (+)
LOC110496530 LOC106588804 coding downstream 133720 53675493 ~ 53703310 (+)
LOC110514975 LOC106588804 coding downstream 172063 53713836 ~ 53730416 (+)
LOC110519664 LOC106588805 coding downstream 270310 53812083 ~ 53882492 (+)
G1561712 NA non-coding upstream 15427 53521464 ~ 53524347 (+)
G1561723 NA non-coding upstream 44060 53495397 ~ 53495714 (+)
G1561593 LOC106588741 non-coding upstream 239804 53292431 ~ 53299970 (+)
G1561562 NA non-coding upstream 403248 53135743 ~ 53136526 (+)
G1561433 NA non-coding upstream 497935 53038951 ~ 53041839 (+)
G1561745 LOC106588797 non-coding downstream 11525 53553298 ~ 53553592 (+)
G1561769 NA non-coding downstream 44597 53586370 ~ 53587352 (+)
G1561792 NA non-coding downstream 59518 53601291 ~ 53602252 (+)
G1561788 NA non-coding downstream 101451 53643224 ~ 53649838 (+)
G1561816 LOC106588788 non-coding downstream 112449 53654222 ~ 53655575 (+)
G1561544 LOC106588750 other upstream 251309 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 360837 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1097833 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1183939 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1282244 52256636 ~ 52257530 (+)
G1561845 NA other downstream 275391 53817164 ~ 53840871 (+)
G1561856 NA other downstream 330400 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 967985 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1596875 55138648 ~ 55139231 (+)

Expression


Co-expression Network