Gene
RNA
| Item | Value |
|---|---|
| gene id | G1561769 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 53586370 ~ 53587352 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: E3 ubiquitin-protein ligase RBBP6-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1786811 | True | 727 | lncRNA | 0.40 | 2 | 53586370 | 53587352 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| itgb8 | LOC106588794 | coding | upstream | 71396 | 53497721 ~ 53514974 (+) |
| LOC110496948 | NA | coding | upstream | 179865 | 53404665 ~ 53406505 (+) |
| LOC110496519 | LOC106588750 | coding | upstream | 279244 | 53277785 ~ 53307126 (+) |
| LOC110496851 | LOC106588750 | coding | upstream | 297745 | 53287015 ~ 53288625 (+) |
| sh3bp5a | LOC106588751 | coding | upstream | 311314 | 53198538 ~ 53275056 (+) |
| LOC110496949 | LOC106588787 | coding | downstream | 31470 | 53618822 ~ 53621390 (+) |
| klhl7 | klhl7 | coding | downstream | 68874 | 53656226 ~ 53663553 (+) |
| LOC110496530 | LOC106588804 | coding | downstream | 88141 | 53675493 ~ 53703310 (+) |
| LOC110514975 | LOC106588804 | coding | downstream | 126484 | 53713836 ~ 53730416 (+) |
| LOC110519664 | LOC106588805 | coding | downstream | 224731 | 53812083 ~ 53882492 (+) |
| G1561745 | LOC106588797 | non-coding | upstream | 32778 | 53553298 ~ 53553592 (+) |
| G1561739 | NA | non-coding | upstream | 44597 | 53539774 ~ 53541773 (+) |
| G1561712 | NA | non-coding | upstream | 62023 | 53521464 ~ 53524347 (+) |
| G1561723 | NA | non-coding | upstream | 90656 | 53495397 ~ 53495714 (+) |
| G1561593 | LOC106588741 | non-coding | upstream | 286400 | 53292431 ~ 53299970 (+) |
| G1561792 | NA | non-coding | downstream | 13939 | 53601291 ~ 53602252 (+) |
| G1561788 | NA | non-coding | downstream | 55872 | 53643224 ~ 53649838 (+) |
| G1561816 | LOC106588788 | non-coding | downstream | 66870 | 53654222 ~ 53655575 (+) |
| G1561834 | NA | non-coding | downstream | 133953 | 53721305 ~ 53721808 (+) |
| G1561544 | LOC106588750 | other | upstream | 297905 | 53277790 ~ 53288465 (+) |
| snrpd1 | snrpd1 | other | upstream | 407433 | 53175661 ~ 53178938 (+) |
| G1560957 | NA | other | upstream | 1144429 | 52441146 ~ 52441941 (+) |
| G1560911 | NA | other | upstream | 1230535 | 52355297 ~ 52355835 (+) |
| G1560811 | LOC100846955 | other | upstream | 1328840 | 52256636 ~ 52257530 (+) |
| G1561845 | NA | other | downstream | 229812 | 53817164 ~ 53840871 (+) |
| G1561856 | NA | other | downstream | 284821 | 53872173 ~ 53876930 (+) |
| LOC110496545 | LOC106588816 | other | downstream | 922406 | 54412770 ~ 54510923 (+) |
| G1563547 | NA | other | downstream | 1551296 | 55138648 ~ 55139231 (+) |
