G1561788


Basic Information

Item Value
gene id G1561788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53643224 ~ 53649838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786843
ATCACTGTAGTTCTCCCTGATGACTTTGTAGAGCGCTGGGACCAGGGAGCCTTTCTCCTTCAGAGACGCTGCGTAGCTGGACACTGCACTGTCAGGAAGGGTcttaAACTCTGACAGCCACTCCTCCACCACTCCTTGGTCCATAGCCAACATCTTCCCTCATCTGCTGTTGTGGACACACCTCTACTATCATGCTATCTCGAGATTTCCTTTGTCTCCAAGTCCACTATTGTTCCGTCCGAGGAAATGGGTAGATATCAATTACTCCATAAAGACACTAGCAAGCTAAATCATTAATCCACATCAAAACCTCCATTTTCATTTACTCCCACCACTCGCCAACACTAGAGTGAACTCGAGAAGGACTAATTCGGAATGGCAGGAATGGTAAGCCA

Function

NR:

description
hyccin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786843 True 395 lncRNA 0.47 3 53643224 53649838

Neighbor

gene id symbol gene type direction distance location
LOC110496949 LOC106588787 coding upstream 21834 53618822 ~ 53621390 (+)
itgb8 LOC106588794 coding upstream 128250 53497721 ~ 53514974 (+)
LOC110496948 NA coding upstream 236719 53404665 ~ 53406505 (+)
LOC110496519 LOC106588750 coding upstream 336098 53277785 ~ 53307126 (+)
LOC110496851 LOC106588750 coding upstream 354599 53287015 ~ 53288625 (+)
klhl7 klhl7 coding downstream 6388 53656226 ~ 53663553 (+)
LOC110496530 LOC106588804 coding downstream 25655 53675493 ~ 53703310 (+)
LOC110514975 LOC106588804 coding downstream 63998 53713836 ~ 53730416 (+)
LOC110519664 LOC106588805 coding downstream 162245 53812083 ~ 53882492 (+)
dync1li1 LOC106588808 coding downstream 266454 53916292 ~ 53928304 (+)
G1561792 NA non-coding upstream 40972 53601291 ~ 53602252 (+)
G1561769 NA non-coding upstream 55872 53586370 ~ 53587352 (+)
G1561745 LOC106588797 non-coding upstream 89632 53553298 ~ 53553592 (+)
G1561739 NA non-coding upstream 101451 53539774 ~ 53541773 (+)
G1561712 NA non-coding upstream 118877 53521464 ~ 53524347 (+)
G1561816 LOC106588788 non-coding downstream 4384 53654222 ~ 53655575 (+)
G1561834 NA non-coding downstream 71467 53721305 ~ 53721808 (+)
G1561837 NA non-coding downstream 82051 53731889 ~ 53732113 (+)
G1561838 NA non-coding downstream 82295 53732133 ~ 53732389 (+)
G1561544 LOC106588750 other upstream 354759 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 464287 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1201283 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1287389 52355297 ~ 52355835 (+)
G1560811 LOC100846955 other upstream 1385694 52256636 ~ 52257530 (+)
G1561845 NA other downstream 167326 53817164 ~ 53840871 (+)
G1561856 NA other downstream 222335 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 859920 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1488810 55138648 ~ 55139231 (+)

Expression


Co-expression Network