G1561840


Basic Information

Item Value
gene id G1561840
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53733054 ~ 53733450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786899
ttattgttgaaggaatgagcgttacaccaaggcctgtactctggagcgtgatcgatttggaggtggagggtccgtcgtgGTCTTGGGCGGTgtatcacagcatcatcggactgagcttgttgtcattgcaggcaatctcaacgctgtgcgttacagggaagacatcctcctccctcatgtggtacccctcctgcaggctcatcctgacatgaccctccagcatgacagtgccaccagccatactgcttgttctgtgcgtgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagctcggatctcaatcccattgagcacacctgggacctgttggatcggagggtgagggctagggccattaccCCAAGAAATGTCagagaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786899 True 397 lncRNA 0.54 1 53733054 53733450

Neighbor

gene id symbol gene type direction distance location
LOC110514975 LOC106588804 coding upstream 2638 53713836 ~ 53730416 (+)
LOC110496530 LOC106588804 coding upstream 29744 53675493 ~ 53703310 (+)
klhl7 klhl7 coding upstream 69501 53656226 ~ 53663553 (+)
LOC110496949 LOC106588787 coding upstream 111664 53618822 ~ 53621390 (+)
itgb8 LOC106588794 coding upstream 218080 53497721 ~ 53514974 (+)
LOC110519664 LOC106588805 coding downstream 78633 53812083 ~ 53882492 (+)
dync1li1 LOC106588808 coding downstream 182842 53916292 ~ 53928304 (+)
LOC110496857 LOC106588809 coding downstream 250187 53983637 ~ 54008038 (+)
gmpr gmpr coding downstream 288832 54022282 ~ 54036714 (+)
LOC118940998 NA coding downstream 521443 54254893 ~ 54258383 (+)
G1561839 LOC105030512 non-coding upstream 69 53732597 ~ 53732985 (+)
G1561838 NA non-coding upstream 665 53732133 ~ 53732389 (+)
G1561837 NA non-coding upstream 941 53731889 ~ 53732113 (+)
G1561834 NA non-coding upstream 11246 53721305 ~ 53721808 (+)
G1561847 NA non-coding downstream 2589 53736039 ~ 53744227 (+)
G1561848 NA non-coding downstream 6734 53740184 ~ 53747303 (+)
G1561851 NA non-coding downstream 36407 53769857 ~ 53803724 (+)
G1561855 NA non-coding downstream 39041 53772491 ~ 53793857 (+)
G1561873 NA non-coding downstream 41755 53775205 ~ 53779066 (+)
G1561544 LOC106588750 other upstream 444589 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 554117 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1291113 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1377219 52355297 ~ 52355835 (+)
G1561845 NA other downstream 83714 53817164 ~ 53840871 (+)
G1561856 NA other downstream 138723 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 776308 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1405198 55138648 ~ 55139231 (+)
G1564470 NA other downstream 2174800 55908085 ~ 55908934 (+)

Expression


Co-expression Network