G1562730


Basic Information

Item Value
gene id G1562730
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53734170 ~ 53743453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787997
TTGGATTGGTTGTCCGCCCTCTCGCTCTCTGCGGTGGTTAGAATGGCTAGTTCAGAGTAACATTCAGCAATgttgttatagaatagatgtttcggcggttgtcagtCTTCTTTAGCCTTAGCCCTCTCGtggttatcgaggtaagctggtctctactcaaaccttagccctctcgtaattgagagaaGCATGGTCTCTAGATAAATTCCCATGGTGGGGGTTATATTCAGAAGGGCAGAAAAAGGCTGTCCCATGACACCAGATCAATGTCTGTACTCATGGGGagggccaatgacttagttaactTTAAAGGGAATTGGGTTCCCTTTCattaaacagtttaaaatcacattacataagttcacaaatagtttaatctttactcattcattttacacaacaattagatgcaagcctcatAACTGAGACTCTCGTGTAAACagggttatggtaatgtggctgtattgtctctcatgagtttcacaaacaTTAAACGAATTGGACCGGTCATAGCTGGATTCTTCCCCGACCGTGTACACCTTCTCCAAAACATGTACATTGTTCAGTCCTCAAGTTCTATGttgtggaagaaattcctttgttctccgTATAAAAACACACTCTTTCTCTATACTGTCTGGCCATGAGGAAGAATCTCCTCCAGGAActtacgacctgagataacagcaGCCTGGAtgtaggagagagaggaatggtgctcgctgtacccaaagagggcaacatcATGACACTAGGGAGGAGCTAGCCATCAGATTAGGTGTACGATTCACTTTGACTTTCACCTctgcaggccgtcattgtaagtaagactttgttcttaactgacttgcctagttaaatataggttaaataaacacatttaaatAGAACAGAGATAGAGGGCACCTGACCTGACACTGGACAAGAGAGCACCTGTATTCGAAACCTTTATAGACATATTCATTTAAAAGGAAATACTCAGGCAAGATGGTCCAAGCATTCTCAGTGTAGCTACTGTAAAATCCGGTTGGTTTCACGTAGAACCTTTTACacagagagttctacatggaacccaaaagagttcgacctggaaccaaaaagggttcaggAAAAGAAGAattacattaaatgtactgtcTATCACTTATCTGATATTCTGAAATATGGTAAATGGCCATTGCAACAAAAACAAggaaaaaaaaagttaaacattATCTGAAAGTAGACTGTTAGATAAAAACAGTTACTGAAAAAAATACAATGCATTTCTCTAGTTTGCTATAGCTACTGTTATCTGAATTACCACTGTTCATATTTAATCTTGTTTCTTTGTTTCCCCTTTACCTGTGAAAGACATTGGGACTAAATATATATCTTGTATGTTATTTGTTTCCATTTGGTAATTAAAACTTCTTGTTGATGCATAATTTGTTTAAATTGAAAAACGTGTTGAACATAAATTgtggtgtgtgcctttacaacaACGTGATCACAGGTAAAGAATGTTTCTGCTTTTGTCCTCAGTTTGCTCTCAGTGACCTATTGTTAGTTTGTATATCCTCACATGACAGAGTTGGACAGAAACTACCAAACAAGCCTGAACAAAGAGATGAGAGTATGAGgaagaaaaaacaaaacatgcgCACAAACCATTTCCAGAACACATCTAATAAAGAGTGCAAAACATCCTCATACTTTCTTGACAGCTCCACCTAAGCAGACGTATAGTTATCTTGTTGTTGCAGCAGGCATAACAGGAGTCATGACCTGAATGTTCACCATGTATAACTGCAAAGCTTGTGGCTGTTTAGAAGGAAAACATTTGAGTGATATCAATATCACAGGAGGTCGGTGTCGCCTTAATTGGGGGgggacaggcttgtggtaatggctggaccggaatcagtggaatggtatcaaacacatcacacacatggtttccacatggtttccacctgttttgatgccatttcatttgctccgttccagccatgagccatcctctcctcagcagcctccactgatcaaGTTCCATTTGTTTAAGATCATtttagtaaccaaaagtgttatatttgattttgtttattttagattcttcaaagtagcctttgccttgatagctttgcacactcttggcattctctcaaccagcttcaccagtcttaaaggagttcccacatatgctgagcacttgttggcagcttttccttcactctgcggtccaactcatcccaaaccatctcaattgggttgaggtaagGGGATTGTgagggccaggtcatctgatgcagcactccatcactcttctttgtcaaatagcccttatatgctggttaagtgtgccttgaattcaaaccCAAAAAATTTGTGTCaacatcaaagcacccccacacctccatgcttcattgtGGGAACTGcccatgcggagatcatccgttcacctattctgcgtctcaaaaagacatgggggttggaaccaaaaatggcacatttggactgatcagaccaaaggacagatctcCACCGTtctcattgctcgtgtttcttggcccaatcaagtctcctcttattattggtgtcctttagtagtggtttctttgcaacaattcgaccatCAAGGCCTGACTcagtatcctctgaacagttgatgtgtctgttaccttaactctgaagcatttattagggctgcaatctgaggtgcagttaactctaatgaacttatcctctgcagcagaggtaactctgtcttcctttcctgtggtggtcctcatgagaggcagtttcatcatagcacttgatagtttttgcaactgcacaagttCTTAATTTTCCGGCTTGACTGACCATGTCTCAAAGgactgatggactgtcatttccttgcttatttgaactgttcttgccagaATATGGactttggtattttaccaaatagggctctcttcTGTTTACCatccataccttgtcacaacacaactgattagctcaaatacattaaggaaagaaattccacaaattaactttgaacaagacacacctgttaattgaaatgcattccaggtgactaccccatgaagctggttgagagaatgccaagagtgtgcaaagctgtcaaggcaatgggtggctattttgaagaatataATGTTTTTGGGTTACTACTTGATTCAATGtgctatttcattgttttgatgtcttcactattctacaacatagaaaaaggtaaaaaataaaaacccttgaatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787997 True 3243 lncRNA 0.40 2 53734170 53743453

Neighbor

gene id symbol gene type direction distance location
LOC110496534 NA coding downstream 28537 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 63668 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 78694 53652973 ~ 53655476 (-)
fam126a LOC106588800 coding downstream 84331 53628866 ~ 53649839 (-)
tomm7 NA coding downstream 105727 53621900 ~ 53628443 (-)
LOC118941188 NA coding upstream 934 53744387 ~ 53747035 (-)
mrpl3 mrpl3 coding upstream 143684 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 158795 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 305411 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 537091 54280544 ~ 54286577 (-)
G1562729 NA non-coding downstream 3643 53703092 ~ 53730527 (-)
G1562682 NA non-coding downstream 222275 53510167 ~ 53511895 (-)
G1562701 NA non-coding downstream 242739 53490200 ~ 53491431 (-)
G1562811 NA non-coding upstream 4143 53747596 ~ 53747867 (-)
G1562815 NA non-coding upstream 8382 53751835 ~ 53752081 (-)
G1562817 NA non-coding upstream 11076 53754529 ~ 53782777 (-)
G1562835 NA non-coding upstream 29963 53773416 ~ 53793921 (-)
G1562762 NA other downstream 131476 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1086393 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1376860 52352725 ~ 52396978 (-)
G1561167 NA other downstream 1483681 52249354 ~ 52250489 (-)
G1562816 LOC100136012 other upstream 8953 53752406 ~ 53752683 (-)
G1562828 NA other upstream 130957 53874410 ~ 53875592 (-)
LOC110496860 LOC106588819 other upstream 895414 54636849 ~ 54652932 (-)
G1563253 NA other upstream 917173 54660626 ~ 54665643 (-)

Expression


Co-expression Network