G1561847


Basic Information

Item Value
gene id G1561847
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53736039 ~ 53744227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1786917
ATATATATTTAGTCCCAATGTCTTTCACAGGTAAAGGGGAAACAAAGAAACAAGATTAAATATGAACAGTGGTAATTCAGATAACAGTAGCTATAGCAAACTAGAGAAATGCATTGTATTTTTTTCAGTAACTGTTTTTATCTAACAGTCTACTTTCAGATaatgtttaactttttttttccTTGTTTTTGTTGCAATGGCCATTTACCATATTTCAGAATATCAGATAAGTGATAgacagtacatttaatgtaatTCTTCTTTTcctgaaccctttttggttccaggtcgaactcttttgggttccatgtagaactctctgtGTAAAAGGTTCTACGTGAAACCAACCGGATTTTACAGTAGCTACACTGAGAATGCTTGGACCATCTTGCCTGAGTATTTCCTTTTAAATGAATATGTCTATAAAGGTTTCGAATACAGGTGCTCTCTTGTCCAGTGTCAGGTCAGGTGCCCTCTATCTCTGTTCTatttaaatgtgtttatttaacctatatttaactaggcaagtcagttaagaacaaagtcttacttacaatgacggcctgcagAGGTGAAAGTCAAAGTGAATCGTACACCTAATCTGATGGCTAGCTCCTCCCTAGTGTCATgatgttgccctctttgggtacagcgagcaccattcctctctctcctacaTCCAGGCtgctgttatctcaggtcgtaagTTCCTGGAGGAGATTCTTCCTCATGGCCAGACAGTATAGAGAAAGAGTGTGTTTTTATAcggagaacaaaggaatttcttccacaaCATAGAACTTGAGGACTGAACAATGTACATGTTTTGGAGAAGGTGTACACGGTCGGGGAAGAATCCAGCTATGACCGGTCCAATTCGTTTAAtgtttgtgaaactcatgagagacaatacagccacattaccataaccctGTTTACACGAGAGTCTCAGTTatgaggcttgcatctaattgttgtgtaaaatgaatgagtaaagattaaactatttgtgaacttatgtaatgtgattttaaactgtttaatGAAAGGGAACCCAATTCCCTTTAAagttaactaagtcattggccctCCCCATGAGTACAGACATTGATCTGGTGTCATGGGACAGCCTTTTTCTGCCCTTCTGAATATAACCCCCACCATGGGAATTTATCTAGAGACCATGCttctctcaattacgagagggctaaggtttgagtagagaccagcttacctcgataaccaCGAGAGGGCTAAGGCTAAAGAAGactgacaaccgccgaaacatctattctataacaacATTGCTGAATGTTACTCTGAACTAGCCATTCTAACCACCGCAGAGAGCGAGAGGGCGGACAACCAATCCAACAGAAACTAGCTTCTTAACAGAGATCAcaacgacacactgagcgtaaatatatatattgattgcaattattcccgaatgagtgagcattcatgtgtaaaggattagcatttcaattgttatgaTAATCAACTTTGTAGTGTCTTTTATCTcggtcgacccccacttcccttttgtccaCCAATCCGCGATaccggtttatcccactagggaaactctgctatcatttccttgtaactatatctgtttgtttgtttgtttatacatttctgtgattatttagttagtaaataaatgatttaagacaattgatatatggatgactcatagtaaAGACTgcgttcgtgcagataaccaacaatttacaacgtttggaatgagactaacttgaggtaaagaataattaattcattagaagactaattgatcagatattaaaatatctgaaagttatattaggaaaattcgaactttgtaatctgaatattttccttggttcCCCCGACTACCTAGTTAATCACAGTTACATGATTagttagtttaatcacgtaataattacagagaatttatTTGATAAAAATAAGTCTTCAGTtgaatgatgccaaagacacgacactagtTATAGTTTCACCAGGTAATACATTGTGATGTAACTAGAAGAGAGGCTGAGTTCACGTCAATGAACCAGATATAATGTATTACCCTTGTTTTGTGCTTCCATACACTCAAGCTGTTGAATTAATGTTTTTCATTTATCATTTGTAGAAATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1786917 True 2144 lncRNA 0.37 2 53736039 53744227

Neighbor

gene id symbol gene type direction distance location
LOC110514975 LOC106588804 coding upstream 5623 53713836 ~ 53730416 (+)
LOC110496530 LOC106588804 coding upstream 32729 53675493 ~ 53703310 (+)
klhl7 klhl7 coding upstream 72486 53656226 ~ 53663553 (+)
LOC110496949 LOC106588787 coding upstream 114649 53618822 ~ 53621390 (+)
itgb8 LOC106588794 coding upstream 221065 53497721 ~ 53514974 (+)
LOC110519664 LOC106588805 coding downstream 67856 53812083 ~ 53882492 (+)
dync1li1 LOC106588808 coding downstream 172065 53916292 ~ 53928304 (+)
LOC110496857 LOC106588809 coding downstream 239410 53983637 ~ 54008038 (+)
gmpr gmpr coding downstream 278055 54022282 ~ 54036714 (+)
LOC118940998 NA coding downstream 510666 54254893 ~ 54258383 (+)
G1561840 NA non-coding upstream 2589 53733054 ~ 53733450 (+)
G1561839 LOC105030512 non-coding upstream 3054 53732597 ~ 53732985 (+)
G1561838 NA non-coding upstream 3650 53732133 ~ 53732389 (+)
G1561837 NA non-coding upstream 3926 53731889 ~ 53732113 (+)
G1561851 NA non-coding downstream 25630 53769857 ~ 53803724 (+)
G1561855 NA non-coding downstream 28264 53772491 ~ 53793857 (+)
G1561873 NA non-coding downstream 30978 53775205 ~ 53779066 (+)
G1561849 NA non-coding downstream 45004 53789231 ~ 53796843 (+)
G1561857 NA non-coding downstream 47465 53791692 ~ 53792239 (+)
G1561544 LOC106588750 other upstream 447574 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 557102 53175661 ~ 53178938 (+)
G1560957 NA other upstream 1294098 52441146 ~ 52441941 (+)
G1560911 NA other upstream 1380204 52355297 ~ 52355835 (+)
G1561845 NA other downstream 72937 53817164 ~ 53840871 (+)
G1561856 NA other downstream 127946 53872173 ~ 53876930 (+)
LOC110496545 LOC106588816 other downstream 765531 54412770 ~ 54510923 (+)
G1563547 NA other downstream 1394421 55138648 ~ 55139231 (+)
G1564470 NA other downstream 2164023 55908085 ~ 55908934 (+)

Expression


Co-expression Network