G1562817


Basic Information

Item Value
gene id G1562817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53754529 ~ 53782777 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788091
ctgttggtttagtctgttccaccCTCTGTTGGTTTCGTCttttcctttgtctgttggtttagtctgttcctttgtctgttggttcaGTCTGttgctccctctgttggtttagtctgttccttcgTCTGTTGgcttagtctgttcctttgtctgtttgtttagtctgttcctttgtctgttggtttagtccgttcctccctctgttggtttagtttgttcctctctctgttggtttagtctgttcctccatctgttggtttagtctaatcctccatctgttggtttagtctgttcctccgtctgttggtttagtctgtttctttgtctgttggtttagtctgttcctccctctgttggtttagtctgttcccccctctgcaggtttagtccgttcctccctctgttggtttagtctgttcctttgtctgttggtttagtctgttcccccctctgcgggtttagtctgttcctttgtctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctttgtctgttggtttagtctgttcctccctctgttagtttagtctgttcctccctctgttagtttagtctgttcctttgtctgttggtttagtctgttcctccatctgttggtttagtctgttcctccgtctgttcctttgtctgttggtttagtctgttcccccctctgcaggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctccctctgttggtttagtctgttcctccgtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788091 True 865 lncRNA 0.46 2 53754529 53782777

Neighbor

gene id symbol gene type direction distance location
LOC118941188 NA coding downstream 7522 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 13477 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 48896 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 84027 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 99053 53652973 ~ 53655476 (-)
mrpl3 mrpl3 coding upstream 104360 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 119471 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 266087 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 497767 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 531447 54314224 ~ 54315645 (-)
G1562815 NA non-coding downstream 2448 53751835 ~ 53752081 (-)
G1562811 NA non-coding downstream 6662 53747596 ~ 53747867 (-)
G1562730 NA non-coding downstream 11076 53734170 ~ 53743453 (-)
G1562823 NA non-coding upstream 34269 53817046 ~ 53822742 (-)
G1562826 NA non-coding upstream 40152 53822929 ~ 53866397 (-)
G1562827 NA non-coding upstream 49175 53831952 ~ 53842917 (-)
G1562837 NA non-coding upstream 52690 53835467 ~ 53844084 (-)
G1562829 NA non-coding upstream 59829 53842606 ~ 53870650 (-)
G1562816 LOC100136012 other downstream 1846 53752406 ~ 53752683 (-)
tomm7 NA other downstream 126107 53621900 ~ 53628443 (-)
G1562762 NA other downstream 151835 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1106752 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1397219 52352725 ~ 52396978 (-)
G1562828 NA other upstream 91633 53874410 ~ 53875592 (-)
LOC110496860 LOC106588819 other upstream 856090 54636849 ~ 54652932 (-)
G1563253 NA other upstream 877849 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2698691 56481468 ~ 56488289 (-)

Expression


Co-expression Network