G1562823


Basic Information

Item Value
gene id G1562823
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53817046 ~ 53822742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788098
gtatctctcttcccctctcgttctttgtatctctctttctctgtatctctcttcccctctctttctctgtatctctcttcacctctctgtctctgtatctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctgcatctcttcccctctctttctctgtatctctcttcccctctctttctccgtatctctctttctctgtatctctcttcccctctcgttctttgtatctctctttctctgtatctctctttctctgtatctctcttcccctctctttctctgtatatctcttcccctctctttctctccatctctcttcccctctcattctctgtatctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctttatctctctttctctgtatctctcttattctgtatctctctttctctgtatctctcttcccctctctttctctgtgtctctctttctctgtatctctctttctctgtgtctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctctctttctctgtttctctcttcccctctctttctctgtttctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctctttttctctgtatctctcttcccctctctttctctgtatctctctttctctgtatctctcgtcccctgtcgttctctgtatcaatctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctatctttctctgcatctctcttcccctctctttctctgcatctcttcccctctctttctctgtttctttctttctctgtgtctctcttcccctctctttctctccatctctcttcccctctctttctctgcatctctctttccctctatctctcttcccctctctttctctccaactctcttctcctctcttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctcttactctccatctctcttcccctctctttctctgtttctcgcttcccctctctttctctgtatctctctatctctcttcccatctctttctctgtatctctcttcccctctcttactctccatctctcttcccctctcgttctctgtatctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctatctttctctgtatctctctttctctgtatctctcttcccctctctttctctgtatctctctttctctgtatctctcgtcccctgtcgttctctgcattaatcctttctctgtatctctcttcccctctctttctctgttctttctttctctgtgtctctcttcccctctctttctctccatctctcttcccctctctttctctgcatctctctttccctctatctctcttcccctctctttctcttcccctctctttctctgtatctctcttcccctctcttactctccatctctcttcccctctctttctctgtttctcgcttcccctctctttctctgtatctctctatctctcttcccatctctttctctgtatctctcttcccctctcttcccctctatctctcttcccctctctttctctgtatctctcttcccctctctttctctccatctctcttccactctctttctctccatctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctccatctctcttccactctcattctctgtatctctctttctctgtaactctcttcccctctctttctccgtatctctctttctctgtatctctcttcccctctcgttctctgtatctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctgtatctgtctttctctgtatctctcttcccctctctttctctgtatctctctttctctatatctctcttcccctctctttctctgtatctctcttcacttctctttctctgcatctcttcccctctctttctctgtatctctctttctctgtatctctcgtcccctgtcgttctctgcattaatcctttctctgtatctctcttcccctctctttctctgttctttctttctctgtgtctctcttcccctctctttctctccatctctcttctcctctcttctctgtatctctcttcccctctctttctctgtatctctcttccactctctttctctgtatctctctttctctgcatctctcttcccctctctttctctgtatctctctccccctctctttctctttatctctcttcccctctctttctctgcttctctcttcccctctctttctctgtttctctcttcccctctctttctctgtgtctctcttcccctctctttctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788098 True 2607 lncRNA 0.45 5 53817046 53822742

Neighbor

gene id symbol gene type direction distance location
LOC118941188 NA coding downstream 70039 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 75994 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 111413 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 146544 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 161570 53652973 ~ 53655476 (-)
mrpl3 mrpl3 coding upstream 64395 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 79506 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 226122 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 457802 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 491482 54314224 ~ 54315645 (-)
G1562835 NA non-coding downstream 23125 53773416 ~ 53793921 (-)
G1562817 NA non-coding downstream 34269 53754529 ~ 53782777 (-)
G1562831 NA non-coding downstream 36032 53778153 ~ 53781014 (-)
G1562815 NA non-coding downstream 64965 53751835 ~ 53752081 (-)
G1562811 NA non-coding downstream 69179 53747596 ~ 53747867 (-)
G1562826 NA non-coding upstream 187 53822929 ~ 53866397 (-)
G1562827 NA non-coding upstream 9210 53831952 ~ 53842917 (-)
G1562837 NA non-coding upstream 12725 53835467 ~ 53844084 (-)
G1562829 NA non-coding upstream 19864 53842606 ~ 53870650 (-)
G1562852 NA non-coding upstream 58119 53880861 ~ 53881183 (-)
G1562816 LOC100136012 other downstream 64363 53752406 ~ 53752683 (-)
tomm7 NA other downstream 188624 53621900 ~ 53628443 (-)
G1562762 NA other downstream 214352 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1169269 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1459736 52352725 ~ 52396978 (-)
G1562828 NA other upstream 51668 53874410 ~ 53875592 (-)
LOC110496860 LOC106588819 other upstream 816125 54636849 ~ 54652932 (-)
G1563253 NA other upstream 837884 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2658726 56481468 ~ 56488289 (-)

Expression


Co-expression Network