G1562827


Basic Information

Item Value
gene id G1562827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53831952 ~ 53842917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788102
ctctctttctctgtatctctcttcccctctctttctctgtgtctctctttctctatatctctcttcccctctctttctctgtatctctctttctctgtgtctctcttcccctctctttctctgtatctctcttcacctctctttctctgtatctctcttccctctcgttctttgtatctctctcctgctctgtatctctgtttctctgtatctctcttcccctctctttctctgtatctctctttctctgtatctctcttcccctctctttctctgtatctctcttcccctctctttctctccatctctcttcccctcttgttctctgtatctctctttctctgtaactctattatcctctctttctctgtatctctctttctcttcatctctcttcccctctctttctctgcatctctcttcatctctctttctctgtatctctcttcccctctctttctctgcttctctcttcccctctctttctctgtttctctcttccccactctttctctgtgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788102 True 520 lncRNA 0.44 2 53831952 53842917

Neighbor

gene id symbol gene type direction distance location
LOC118941188 NA coding downstream 84945 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 90900 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 126319 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 161450 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 176476 53652973 ~ 53655476 (-)
mrpl3 mrpl3 coding upstream 44220 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 59331 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 205947 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 437627 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 471307 54314224 ~ 54315645 (-)
G1562823 NA non-coding downstream 9210 53817046 ~ 53822742 (-)
G1562835 NA non-coding downstream 38031 53773416 ~ 53793921 (-)
G1562817 NA non-coding downstream 49175 53754529 ~ 53782777 (-)
G1562831 NA non-coding downstream 50938 53778153 ~ 53781014 (-)
G1562815 NA non-coding downstream 79871 53751835 ~ 53752081 (-)
G1562852 NA non-coding upstream 37944 53880861 ~ 53881183 (-)
G1562853 NA non-coding upstream 38449 53881366 ~ 53883069 (-)
G1562854 NA non-coding upstream 40160 53883077 ~ 53884156 (-)
G1562857 NA non-coding upstream 53057 53895974 ~ 53896404 (-)
G1562856 NA non-coding upstream 53863 53896780 ~ 53898361 (-)
G1562816 LOC100136012 other downstream 79269 53752406 ~ 53752683 (-)
tomm7 NA other downstream 203530 53621900 ~ 53628443 (-)
G1562762 NA other downstream 229258 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1184175 52644989 ~ 52647777 (-)
LOC110496491 LOC106588724 other downstream 1474642 52352725 ~ 52396978 (-)
G1562828 NA other upstream 31493 53874410 ~ 53875592 (-)
LOC110496860 LOC106588819 other upstream 795950 54636849 ~ 54652932 (-)
G1563253 NA other upstream 817709 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2638551 56481468 ~ 56488289 (-)

Expression


Co-expression Network