XLOC_003479 (cxxc1b)


Basic Information

Item Value
gene id XLOC_003479
gene name cxxc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25539698 ~ 25550845 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006822
ATTAGCCTTCTGCGCACATACACAGCCGAAACGACGTTGTTAGCTGTCTGCCCACGGTCAGAATATTTCTGTTTATAATACCGCTTCATTTCTATTTTTATGTGGGCATTTATTTCAGTTATTATAGTCGCAGCATTCACTATGCAGTGATATATTATATGAATTAATTGATAGTTCATCCGTTTGATCGGATCCTTTTGAAGGCGGGGAGCAGCGATGGACAGCGAAATGTCTGATATGGACCAGACTCCAGGTCTGGACAACAGTATGGAAAAAGGAGAAAATGCTCCTCTTTACTGCATTTGTCGAAAATCAGACATCAACTGCTTCATGATTGGTTGTGACAACTGCAATGAGTGGTTTCACGGTCACTGTATTAATGTGACGGAGAAGATGGCCAAAGCTATAAGAGAGTGGTACTGTCAACAGTGTCGGGcAAGGGATCCATCACTTTCAATACGATATCGAAAGAAGAACCGCGATAAAGATGTTGAGCCCGAGAGGGTTGAGAAACGATCCAGCACTCCAGAATACAAGATTGATAAGCGACGTGGGTCTAAAGTGAAGCGCTCTGCCCGTATGTGTGGTGAATGTGAACCCTGCACCAGGACAGAGGACTGTGGTCATTGCGACTTCTGTAAAGACATGAAGAAATTTGGAGGCCCAAACAAGATTCGTCAGAAGTGTCGTCTGAGGCAGTGTGTTGTTCGTGCTCGGaaaatgctgcGTGTTCGGGATGAGGAGTTTTCGCTGCGTGAGAGGAAAGACAATATAATGCACAGGAATAGACGATACTCAGATGATTATGATGAGAACGATATGGATCTATATGAGCACTACAAGGACAGAAATGCGtCATGGGGCAGTGAGGATGATGATGGCCAACTATACAGTCCTGTTCCACGGAAGAAAGCTATAAAAGTCAAGCACGTCAAGAGGAGAGACAAAAAATTTGACAAGAAGAAAGAGTCCCGTCGCCACAAGCAGAAGCAGAAGCACCGTGATCGTTTGCGACACAGTGATAGGACAGACGGCAGACACGGAGGAGACACGCAACAGTGCCTGGGGCCAAACTGCATTGAGCCGGCACGGCCAAACTCAAAATACTGCTCTGAGGACTGTGGCATGAAGCTGGCCGCCAATCGCATCTATGAAATCCTCCCGCAGCGCATCCAACAGTGGCAGCAAAGCCCTTGCATTGCGGAGGAGCAGGGTAAAAAACAGCTGGAGCGCATCCGCCGAGAGCAGCAGGCCGCACGTATGCGCCTGGCAGAGATGGAGCGCCGTTTCCACGAGCTGGAGGGCATCATTGCCAAAGCCAAGCAGCAGCTGGTCCTTCAGGATGAGGACGTGAATGAAACAGACAGTGAGGACACAGACCTTCAGATCTTCTGTGTGTCCTGTAGTCACCCCGTCAACCCCAAGGTGGCACTCAGGCATATGGAGAGATGTTATGCCAAGtatgaaaGCCAGACGTCTTTCGGTTCCATTTTCCCAACTAGAATAGAAGGGGCAACAAGACTTTTCTGTGACGTGTACAACCCTCAGAGTAAAACATACTGCAAGAGACTGCAAGTTTTATGTCCAGAACATTCCAGAGACCCAAAGGTCACATCAGATGAGGTGTGTGGATGTCCACTAGTCCGTAACGTGTTTGATCCAACTGGAGATTACTGCAGGGTCTCCAAACGCAAGTGCAACAAGCACTACTGCTGGGAGAAGCTCAGGCGGGCCGAGGTGGACCTGGAGCGTGTCAGAGTGTGGTATAAACTGGACGAGTTGTTTGAACAGGAACGCAATGTGAGGACGGCCATGACCAACAGAGCGGGACTGCTGGCCCTCATGCTCCACCAGACCATCCAGCATGACCCGCTGACCACCGACCTCCGCAGCAGCAAAGACAGATAGCCATCTCAGTAATCAGTATTCACTTGAAAAAACCCTCCTGttcatatttgtatatttttcataTTGTATATTTTGTCACTTTGACCATTCACATTAAACACCTTCATGTGTC
>TCONS_00006823
CCAGTGTGCTTGAATATTATTCCATAGTCacataaagtaattattttaatcagCACTGTAGAGCTCTAAGGGTGTCTCACAATATCACATTTGCAATCACTTGACTTCATACTGTGTCAATCTGTGCAGTCGCATCTATGAAATCCTCCCGCAGCGCATCCAACAGTGGCAGCAAAGCCCTTGCATTGCGGAGGAGCAGGGTAAAAAACAGCTGGAGCGCATCCGCCGAGAGCAGCAGGCCGCACGTATGCGCCTGGCAGAGATGGAGCGCCGTTTCCACGAGCTGGAGGGCATCATTGCCAAAGCCAAGCAGCAGCTGGTCCTTCAGGATGAGGACGTGAATGAAACAGACAGTGAGGACACAGACCTTCAGATCTTCTGTGTGTCCTGTAGTCACCCCGTCAACCCCAAGGTGGCACTCAGGCATATGGAGAGATGTTATGCCAAGtatgaaaGCCAGACGTCTTTCGGTTCCATTTTCCCAACTAGAATAGAAG

Function

symbol description
cxxc1b Predicted to enable DNA binding activity and zinc ion binding activity. Acts upstream of or within DNA methylation on cytosine; blood vessel development; and hemopoiesis. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Is expressed in retinal cone cell and retinal photoreceptor layer. Orthologous to human CXXC1 (CXXC finger protein 1).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0001568 blood vessel development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0032776 DNA methylation on cytosine biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030728-4 Predicted to enable DNA binding activity and zinc ion binding activity. Acts upstream of or within DNA methylation on cytosine; blood vessel development; and hemopoiesis. Predicted to be located in nucleus. Predicted to be part of Set1C/COMPASS complex. Is expressed in retinal cone cell and retinal photoreceptor layer. Orthologous to human CXXC1 (CXXC finger protein 1).

Ensembl:

ensembl_id ENSDARG00000025718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006822 False 2020 mRNA 0.48 14 25539698 25550845
TCONS_00006823 True 497 lncRNA 0.50 3 25547854 25548546

Neighbor

gene id symbol gene type direction distance location
XLOC_003478 tfe3b coding upstream 19861 25504215 ~ 25519837 (+)
XLOC_003477 gnl3l coding upstream 37207 25485774 ~ 25502491 (+)
XLOC_003476 opn1lw2 coding upstream 56492 25481046 ~ 25483206 (+)
XLOC_003475 opn1lw1 coding upstream 59661 25477643 ~ 25480037 (+)
XLOC_003474 opn1sw2 coding upstream 64295 25459697 ~ 25475403 (+)
XLOC_003480 mbd1b coding downstream 9227 25560072 ~ 25576199 (+)
XLOC_003481 ccdc120 coding downstream 33105 25583950 ~ 25618583 (+)
XLOC_003482 comtb coding downstream 69047 25619892 ~ 25631442 (+)
XLOC_003483 grm6b coding downstream 83196 25634041 ~ 25679721 (+)
XLOC_003484 otud5b coding downstream 130490 25681335 ~ 25689873 (+)
XLOC_003369 CR854846.2 misc upstream 9416616 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12827702 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12845435 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12854099 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12859670 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 273463 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 311503 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 479600 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 958584 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1360760 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 278525 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 527102 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 637672 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 675237 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1152112 26702957 ~ 26709080 (+)

Expression


Co-expression Network