G1562853


Basic Information

Item Value
gene id G1562853
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53881366 ~ 53883069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788134
gggaggatGGTGGGGAGGGATAGCGGAGgatgggtgaggagggggagggatgtAGAGTGATTTGGGGGTGAGGTTTGTCTGAGTGGGGGGCTCTGGAGTGACCCCTGGGTGTAGGAAGCGGGGGGGAAGAGGGCTGGTAGGGCAGGTgatgggaggaggaaggggaggcagcACTATGGTGGTGGGTGGAAGGATAATGGAAGGCGCTATGATGGGGTGAGGAGGGGCAGGACTGGTAATGGTGTGAAGCATGATGAGGGGAGACAGGCATTCTCTGAGGAGAGGTAAAATGGAGGGAGCTGTAATGGGGGTAGGAGTGGCGATGGGGGGAGGTGTGAGATTGATGATGAGGAGTAACGTGATTCTGAGAGACCTGTGAGTCTTTAATGGGGTTAAAGTTcatgttagggttagagttattgCTATAGTTCCAGGAAGTCTTATTGGAGTTACTATTGGGCAGTATGTTAGGCTCAGAGTGGTTCCAAGCAGTAGCCATGCTGTGGTTGGTGTAGTTAGTGGTGGTAGGATTACTGGTAGTAGTAGAGGGACCAGTCCCCTTCTTGTAGAGGAAGACGTTGTAGTGCAGAGGGGGGCTGGCCTCGGGGCGGAGCTTAGCCTCTTTAGGGAGGAGCAACTGTAGACCAATGGTGACTCCATCCTGCTTTAGAAATATATAGGGTTGAGAGTCAGAGGAGGATAGACATTTATAGACTAGAGAAGATAGAAATAAGTTGGATAGACAGGGTAAgtgagaaagataaagagagtgaTGGTTgagatagagggaaggaatgGAGAAATGGAGAACAAGGGTTAAGAAAGAGAacaggtgtgcatgtgtgtgagagagggaggacagctcataataatggctggaacgagcAAATGGCATcacaccatgtgtttgatgtgtttgataccattacaTTGATTCCACTCTAGCCATTATCATCAGCCCGTCATCCCAAATGAggcgccaccaacctcctgtgagagtacgttctattggttgcaagaattttgtataatattttaaaataacaaaatgtaagTTTTGAATCTGGCGTCGTTTTGCGTATCAGTTCAATCTTATTtcaaaatatattgtttttttaaaaatctattagtatatttgagtttaaccacattatttgttctgtttttgattttctggtggattaaactgaaatttaaccaactttctatggcttgtttaaaaaattacGATATTTGGGAGATGATTTCCTTTTTaaataactgaaagtgagaggttgtaatctgaataaaggggaaaaggccattcttgaacatggggtgagacattttATTAATTTGCTAGAGAAcaagtttggatttaagtataacttttgtatgattgacacctttagtgagaggtctaatgctttaatatttaatcatttctgccctccgagttcatattcattatataaataggcccgtttaattttgtctggtttgccgttccaaataaaatggaatataagaccataagcaaataggtaaacagggatatgactaaagaattaatcagggtgatttttccacaaatagacaggtattttcctttccatggtagcatgatccatttttgctaactttctgtAAAAATGTATTGGTGTGAGATCATTTCTTTATTTCGGGAaatgtataccgagtatgtccacatcaccgtcagaccat
>TU1788129
gggaggatGGTGGGGAGGGATAGCGGAGgatgggtgaggagggggagggatgtAGAGTGATTTGGGGGTGAGGTTTGTCTGAGTGGGGGGCTCTGGAGTGACCCCTGGGTGTAGGAAGCGGGGGGGAAGAGGGCTGGTAGGGCAGGTgatgggaggaggaaggggaggcagcACTATGGTGGTGGGTGGAAGGATAATGGAAGGCGCTATGATGGGGTGAGGAGGGGCAGGACTGGTAATGGTGTGAAGCATGATGAGGGGAGACAGGCATTCTCTGAGGAGAGGTAAAATGGAGGGAGCTGTAATGGGGGTAGGAGTGGCGATGGGGGGAGGTGTGAGATTGATGATGAGGAGTAACGTGATTCTGAGAGACCTGTGAGTCTTTAATGGGGTTAAAGTTcatgttagggttagagttattgCTATAGTTCCAGGAAGTCTTATTGGAGTTACTATTGGGCAGTATGTTAGGCTCAGAGTGGTTCCAAGCAGTAGCCATGCTGTGGTTGGTGTAGTTAGTGGTGGTAGGATTACTGGTAGTAGTAGAGGGACCAGTCCCCTTCTTGTAGAGGAAGACGTTGTAGTGCAGAGGGGGGCTGGCCTCGGGGCGGAGCTTAGCCTCTTTAGGGAGGAGCAACTGTAGACCAATGGTGACTCCATCCTGCTTTAGAAATATATAGGGTTGAGAGTCAGAGGAGGATAGACATTTATAGACTAGAGAAGATAGAAATAAGTTGGATAGACAGGGTAAgtgagaaagataaagagagtgaTGGTTgagatagagggaaggaatgGAGAAATGGAGAACAAGGGTTAAGAAAGAGAacaggtgtgcatgtgtgtgagagagggaggacagctcataataatggctggaacgagcAAATGGCATcacaccatgtgtttgatgtgtttgataccattacaTTGATTCCACTCTAGCCATTATCATCAGCCCGTCATCCCAAATGAggcgccaccaacctcctgtgagagtacgttctattggttgcaaga

Function

NR:

description
PREDICTED: uncharacterized protein LOC107748647 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788134 False 1704 lncRNA 0.42 1 53881366 53883069
TU1788129 True 1020 lncRNA 0.50 1 53882050 53883069

Neighbor

gene id symbol gene type direction distance location
LOC118941188 NA coding downstream 134359 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 140314 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 175733 53703762 ~ 53705633 (-)
aste1b aste1 coding downstream 210864 53663547 ~ 53670502 (-)
si:ch73-345f18.3 LOC106588788 coding downstream 225890 53652973 ~ 53655476 (-)
mrpl3 mrpl3 coding upstream 4068 53887137 ~ 53895002 (-)
cpne4b cpne4 coding upstream 19179 53902248 ~ 53915395 (-)
atxn1a LOC106588811 coding upstream 165795 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 397475 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 431155 54314224 ~ 54315645 (-)
G1562852 NA non-coding downstream 183 53880861 ~ 53881183 (-)
G1562829 NA non-coding downstream 10716 53842606 ~ 53870650 (-)
G1562826 NA non-coding downstream 14969 53822929 ~ 53866397 (-)
G1562837 NA non-coding downstream 37282 53835467 ~ 53844084 (-)
G1562827 NA non-coding downstream 38449 53831952 ~ 53842917 (-)
G1562854 NA non-coding upstream 8 53883077 ~ 53884156 (-)
G1562857 NA non-coding upstream 12905 53895974 ~ 53896404 (-)
G1562856 NA non-coding upstream 13711 53896780 ~ 53898361 (-)
G1562859 NA non-coding upstream 22193 53905262 ~ 53905562 (-)
G1562860 NA non-coding upstream 24998 53908067 ~ 53908275 (-)
G1562828 NA other downstream 5774 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 128683 53752406 ~ 53752683 (-)
tomm7 NA other downstream 252944 53621900 ~ 53628443 (-)
G1562762 NA other downstream 278672 53598650 ~ 53602694 (-)
G1561279 NA other downstream 1233589 52644989 ~ 52647777 (-)
LOC110496860 LOC106588819 other upstream 755798 54636849 ~ 54652932 (-)
G1563253 NA other upstream 777557 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2598399 56481468 ~ 56488289 (-)
LOC110496560 LOC106588840 other upstream 2845283 56728341 ~ 56737381 (-)

Expression


Co-expression Network