G1562868 (LOC106588808)


Basic Information

Item Value
gene id G1562868
gene name LOC106588808
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 53924660 ~ 53925478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788151
CCCCTGGTCGTCCGGCAGATGCAGGAGGCTGTTTGGAGAGCAGCGACTGCAGCTTGAGCAGAAACACCTGGTCATCTTCAGCCTGAATCTCCTTCTCATGAACAAACTTTCTGACAGGCGGTTTGACGATGACCTCCTCAAAGATGTCGTCTAGTTTCAGCGTTTGGAAGTTCTCATGGAGGATAGATATCTTATTTTCATTATCCCACCCTGACGGAatGAAGACTGTGTCTTTCTCCACCAGTTGAGCAGGGTAGTGGAAGGGGAAACCGTAGAGTCTGTGAACCAGGTATTTATACAGAACATCCACATTCTTCATTTCCTTAACCGACGTATACAGCAGAGACGCCCCGTCTGACACAGCATTAAGGACAGTATCACTCACTACACGATCCAAGGCAGGCACAAAGAAATCAACCGCCATGTTGTCTCTACCTTTACACTGCATGCAGATGGAGTCTGGGTTAGTATGATGCTACGAAAAAGTGATCAGAGTTaaagtgtgtgtgcg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788151 True 511 lncRNA 0.48 4 53924660 53925478

Neighbor

gene id symbol gene type direction distance location
cpne4b cpne4 coding downstream 9265 53902248 ~ 53915395 (-)
mrpl3 mrpl3 coding downstream 29658 53887137 ~ 53895002 (-)
LOC118941188 NA coding downstream 177653 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 183608 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 219027 53703762 ~ 53705633 (-)
atxn1a LOC106588811 coding upstream 123386 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 355066 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 388746 54314224 ~ 54315645 (-)
LOC118941189 mrpl53 coding upstream 390646 54316124 ~ 54317624 (-)
tpd52 tpd52 coding upstream 600215 54525693 ~ 54552317 (-)
G1562860 NA non-coding downstream 16385 53908067 ~ 53908275 (-)
G1562859 NA non-coding downstream 19098 53905262 ~ 53905562 (-)
G1562856 NA non-coding downstream 26299 53896780 ~ 53898361 (-)
G1562857 NA non-coding downstream 28256 53895974 ~ 53896404 (-)
G1562854 NA non-coding downstream 40504 53883077 ~ 53884156 (-)
G1562866 NA non-coding upstream 2243 53927721 ~ 53928165 (-)
G1562930 LOC106588809 non-coding upstream 80608 54006086 ~ 54008006 (-)
G1562891 NA non-coding upstream 118620 54044098 ~ 54047835 (-)
G1562978 NA non-coding upstream 197984 54123462 ~ 54123782 (-)
G1562828 NA other downstream 49068 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 171977 53752406 ~ 53752683 (-)
tomm7 NA other downstream 296238 53621900 ~ 53628443 (-)
G1562762 NA other downstream 321966 53598650 ~ 53602694 (-)
LOC110496860 LOC106588819 other upstream 713389 54636849 ~ 54652932 (-)
G1563253 NA other upstream 735148 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2555990 56481468 ~ 56488289 (-)
LOC110496560 LOC106588840 other upstream 2802874 56728341 ~ 56737381 (-)
G1566899 NA other upstream 4102033 58027511 ~ 58027790 (-)

Expression


Co-expression Network