G1562930 (LOC106588809)


Basic Information

Item Value
gene id G1562930
gene name LOC106588809
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54006086 ~ 54008006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788224
TTTTCTAGTTCAAAGAAATACAATATAAAAGACAGTTCTTTCTACATTTGCAGAGCATAGTTTTTGCTTCAGAAAACAGAAACAAATCCTACTTGAACAAAGAGATGAAATAATCAATCCCCTGCAGTGACTATGTGCCAAATGGTGTCAGCAATAAAGACAACATATTCCTCAAAGAAAGAATGCATATCAAAACACAATGTcgttgtctcaaatggcaccctattcctaaaCAGTGCACTAATTTCAACCAGAgtgctatgggctctggtcaaaagtactgcactgcactgcatagggaatagggtgccacttgagaCGCAAGCCAGTGTTGCTACATTAAGGCAAAACCCTATGGATAAAACACTGGTGAAGTTTCCTTGGTAAAGTGACAGTGTATTCAttcttccaccccccccccccccccccccccaaaaaaaaaaaaaaactcaaaaagCAGCTCGTATTGCACTGACAGATCGACTAGTACCCTTTAATAATAAAATCATAAGGAACTCCCTAGTTGACCACATAGAACAGAAGTtgaggacgcacacacacacacacaccgctacaCAGTAGAGGCTGAAAaacagtagcctggtcccagaactgCTTGTGCTGTATAGCTAGCTCCTAAAACCTGGGTTAGTTATACAACACAAGCCAATCTGGGATCAGGTTAAAAAAACAGCCTTACTAATAAATAATCACAGATCACTTATTGAGTAAAAGAATACAGGGAGCATCTTATTTTGGGGCTTCCATCTGTGAAGGTTCTGTTATGGGATAGAATGCTGAATGTCTGGAGCTCATAGAGTTCCGTATGAGTGGAGTTACTTTATAAAGACCCATTGGGAATGGACTAGGAGATTCAACCATTTATCTTTCCCTGTCAGAGTTCTGGTTTGGTTCCAGAACCTGGCACTCATATACACATTAATACCGGGCTTATCGTCAAGACTTCCCcttggttgcatcccaaattgcacccctTCCCTGCAAAGTGCAccactggtcaaaagtggtgcagtactgtacataggaaatagggtgccttttgggaaagTACTTCTCTAAAATCAGAATGCAGTGCTGTACCAGGGCCAGATTCCTACCCCCAAATAACTTCTCATTGGCATGGAAACagaacaaaaaaatgcatttcacTCCATTAGAACCATAAAATGAGATTCTAAAAGCTTAAAACGAAGAAACTTAAATGCAAATATACTTATAAAACAACTGAACGATTATGTACGTTGCCTACTATTCTCCTAGAACACAGAATTCCCTCATATTGTACAAGCGTTACAGGCTATGAGCCCAATAGATCATTCACATTCTGTACACGGATAtggagcaaaaaaacaaacaaaagcacAATCCAAATGAAATAAATCCGATCACACCGCTACTGCTGATCAAATCAACAGCTGCAGTTCAATTAAGAAAATATAATAGGCAAAAATCCCAAATCCATCattggtttaaaaaaataaatatcgaCAGTGGAAAAATACCACTGTCAGGATGGTAAGGTGATAAACAAAGAAACCGTGGTGTTGGGACTGGACTGTGTCTGgaatggcatcatattccctaaTTAGTGCATTATTGGGGACAGCACTATGTAGGGTgccagggtgctatttgggatgcagtctggaAGTGGGGGAGTGGTTTATGTCTCAGTCTGGTAGATCTTGTTGGAGTCGTGGTGGTTGTTGGTGTTGGAGTGGTCCTTGGTGTGGCAGGTATATGCTAGCCCACCGATAGCTCTGTGGACGGGGCTGCTGTCGTCGTCGTGGGAGGTGTTGCTGAGGTTTAGGAGACTGGTGCAGGTGGGCAGGTAGACATGCTGCACGTGTTCCACCTCAGATCGACACACCGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788224 True 1894 lncRNA 0.42 2 54006086 54008006

Neighbor

gene id symbol gene type direction distance location
cpne4b cpne4 coding downstream 90691 53902248 ~ 53915395 (-)
mrpl3 mrpl3 coding downstream 111084 53887137 ~ 53895002 (-)
LOC118941188 NA coding downstream 259079 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 265034 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 300453 53703762 ~ 53705633 (-)
atxn1a LOC106588811 coding upstream 40858 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 272538 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 306218 54314224 ~ 54315645 (-)
LOC118941189 mrpl53 coding upstream 308118 54316124 ~ 54317624 (-)
tpd52 tpd52 coding upstream 517687 54525693 ~ 54552317 (-)
G1562866 NA non-coding downstream 77921 53927721 ~ 53928165 (-)
G1562868 LOC106588808 non-coding downstream 80608 53924660 ~ 53925478 (-)
G1562860 NA non-coding downstream 97811 53908067 ~ 53908275 (-)
G1562859 NA non-coding downstream 100524 53905262 ~ 53905562 (-)
G1562856 NA non-coding downstream 107725 53896780 ~ 53898361 (-)
G1562891 NA non-coding upstream 36092 54044098 ~ 54047835 (-)
G1562978 NA non-coding upstream 115456 54123462 ~ 54123782 (-)
G1563015 NA non-coding upstream 207421 54215427 ~ 54215762 (-)
G1563002 NA non-coding upstream 227042 54235048 ~ 54235442 (-)
G1562828 NA other downstream 130494 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 253403 53752406 ~ 53752683 (-)
tomm7 NA other downstream 377664 53621900 ~ 53628443 (-)
G1562762 NA other downstream 403392 53598650 ~ 53602694 (-)
LOC110496860 LOC106588819 other upstream 630861 54636849 ~ 54652932 (-)
G1563253 NA other upstream 652620 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2473462 56481468 ~ 56488289 (-)
LOC110496560 LOC106588840 other upstream 2720346 56728341 ~ 56737381 (-)
G1566899 NA other upstream 4019505 58027511 ~ 58027790 (-)

Expression


Co-expression Network