G1562891


Basic Information

Item Value
gene id G1562891
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54044098 ~ 54047835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788179
acacgcacacatacaggCTCACATACCCTCTTTAACATACCAGCCTAGTCATTTCAGCAACTTTCAATTTCTATTAAGTTGTTGCAGTTGCACGGCCTGCCATTCAAAAAATTCAGGGAGATTTTCACATATGCAGTGACAGACTGTCCAGTAAGGACTAAAGTACCCATGATGCTACACCCACtagtgacctctaacctctgactaCTAGTTCAGGTATCCATGGCCAGCCAGCCTCTGTCATACCCTCTCTAGAACCTCAGCAaccagttagttagttTACCCTCAGCAACCGCTAGCTACCTTCTATCAATGGCCTGGCCTTACATGTGCAACTGCCTTTTTCTTCCCCCTAGCACAGTTTACTTCTGCTCTCtagttcccacacacacactcactttttATTTTCTGTTAGAGACATATTAAGTAACAGTGTTCACGCTCCAGTGGGGATGCTTGCATGTTGAGATGAGTGTTAAGTGAACCCAGAGATTCACCACAGTTTGTTTTTCTTGTTTTAGGAGTAAacaaaatagacacacacacacacacacatacaggaagCCACGTTCACCCGATCTGCAATGTCTGATTAGGTCAGCTTTACAATCAGGTTACAATCAGGTTAACCTGTGTCAGGTTAGTTGGAGAGGTGAGAGGCGTAGTGGGCAGGACAGGTAGATGTTAGAGGCCAGGACTGAAAATAAGGGGAATGCAGTCAGGAGATTTAGCCTAATGTATAATACAATGTAGTGGCTTGTTATAAGGTTGTATTCAAGTTGTACTAAAATTGTGTGAGGTTAAAATAAAGTAGTATTTAGATGGAGGGGACAGCAGAGCTTGTGGCAATTACACAttgttattttaatttaattttgttttttttatttctagtTCAGGTAGTCCCAGTTCTTATCTATCAGGATAATGATTTCCGTTGCCCTTGGAATCATACTGTATGTGCAATAGTTGTCTTTGTTTATACTTTTTCTCTCCCATTGTTGTGCCAAGTGTATGTAGCATTGTCCCTGTCTGATGTTTGTTAGCCATGTACTGTACCCCTGTACTGTGCCCCTAAAATGTCTTCAATTTCATTTGCCTCACACTAGACAGATTTCTTTAACTCAGGAAGGTTTAGTGCAGAATGGGTGGATAAGAATGGAGAGTGAGTGAGCGTATtacctgtgtgttggtgtgtcaaGCTGGCAGCATATGCACGCCTACCGGTATGTAGAAGTATGTCTTTGACCTCAGTAAACGGAATGCTTTGTCAGTCAACGCTCCAGATAGAAGTTCATTTACAGTCTGACTGTCAAGAGTCTGGATACACTAAACGATTCTCCATTCTGCAGTCCAGGAAAGTtgtcagtcagagagagtgatGTAAGATAGagataaagaaaaataaataatgagtGATATCGAAAGACAGACACATGCGCCGGGCTAGGGAGAGGTGTACTGTGCTTGTCATTGGAGAGCCATTCTTGgtatgtttgtgttgttgtgagggagaggtgaaggacaGGTGACATGGCAGTACCATGATGTCAGTGGAAGAGGTATGTATGTAGTGTTGACATAGAAAGTCTCCCTGCCCTGGGAGCTGTTGGCTTTCAGGTGGATTTATAATGTTTATCAGCCTCTGGTGAAGTAAGTTCCCTTAGAAAGACTTGTGTGCTCTGTGTTAGTACTCTGTCCAGTTTCTACTGTGTGTTGTTCATCTGCATCATGTCAACGGCTGTGTGAGAGTGTGGAGAGACATGTTTGCCTAAGGCTAGTTGCATACAGGTATGTGGAAATATGTGTGGACACGTTTTTGTTTAAACTTGAGATAGGTTGTCCCCACCAGCCTTTCATAATGATGttgtttattttctgtgtacgtgtgtgtgtgtgtgcctgcgtgtgcgtgtgtgtggtgttctcCTATGGACTTTGAGATCACTAGCCCTAACCCTCAATAAGGTCCAGAGAGAAAAGACAGTTGACagagttattataacctaatatATTAGTGGGGACCACTTTTGTAAAACCAACCAATAAAGATGCACATTTAAAGTAGCCGACTAACGGCGTAGACTTGATACTGTTTCAGCACtttctaaacccag

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788179 True 2117 lncRNA 0.42 2 54044098 54047835

Neighbor

gene id symbol gene type direction distance location
cpne4b cpne4 coding downstream 128703 53902248 ~ 53915395 (-)
mrpl3 mrpl3 coding downstream 149096 53887137 ~ 53895002 (-)
LOC118941188 NA coding downstream 297091 53744387 ~ 53747035 (-)
LOC110496535 NA coding downstream 303046 53738342 ~ 53741052 (-)
LOC110496534 NA coding downstream 338465 53703762 ~ 53705633 (-)
atxn1a LOC106588811 coding upstream 1029 54048864 ~ 54244155 (-)
LOC110496543 LOC106588812 coding upstream 232709 54280544 ~ 54286577 (-)
LOC110496544 LOC106588813 coding upstream 266389 54314224 ~ 54315645 (-)
LOC118941189 mrpl53 coding upstream 268289 54316124 ~ 54317624 (-)
tpd52 tpd52 coding upstream 477858 54525693 ~ 54552317 (-)
G1562930 LOC106588809 non-coding downstream 36092 54006086 ~ 54008006 (-)
G1562866 NA non-coding downstream 115933 53927721 ~ 53928165 (-)
G1562868 LOC106588808 non-coding downstream 118620 53924660 ~ 53925478 (-)
G1562860 NA non-coding downstream 135823 53908067 ~ 53908275 (-)
G1562859 NA non-coding downstream 138536 53905262 ~ 53905562 (-)
G1562978 NA non-coding upstream 75627 54123462 ~ 54123782 (-)
G1563015 NA non-coding upstream 167592 54215427 ~ 54215762 (-)
G1563002 NA non-coding upstream 187213 54235048 ~ 54235442 (-)
G1562828 NA other downstream 168506 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 291415 53752406 ~ 53752683 (-)
tomm7 NA other downstream 415676 53621900 ~ 53628443 (-)
G1562762 NA other downstream 441404 53598650 ~ 53602694 (-)
LOC110496860 LOC106588819 other upstream 591032 54636849 ~ 54652932 (-)
G1563253 NA other upstream 612791 54660626 ~ 54665643 (-)
G1565122 LOC106613431 other upstream 2433633 56481468 ~ 56488289 (-)
LOC110496560 LOC106588840 other upstream 2680517 56728341 ~ 56737381 (-)
G1566899 NA other upstream 3979676 58027511 ~ 58027790 (-)

Expression


Co-expression Network