G1561956


Basic Information

Item Value
gene id G1561956
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54084868 ~ 54097923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787058
aagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgagagagagagagagtgtacaacgtagaacaccaaataatgcatgcagagcagaattaggccgatacccactaattatcaaaatccagaaaagagccgttaaattctacaaccacctaaaaggaagcgattcccaaaccttccataacaaagccatcacctacagagaaattaacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787058 True 250 lncRNA 0.43 2 54084868 54097923

Neighbor

gene id symbol gene type direction distance location
gmpr gmpr coding upstream 48154 54022282 ~ 54036714 (+)
LOC110496857 LOC106588809 coding upstream 76830 53983637 ~ 54008038 (+)
dync1li1 LOC106588808 coding upstream 156687 53916292 ~ 53928304 (+)
LOC110519664 LOC106588805 coding upstream 202376 53812083 ~ 53882492 (+)
LOC110514975 LOC106588804 coding upstream 354452 53713836 ~ 53730416 (+)
LOC118940998 NA coding downstream 156970 54254893 ~ 54258383 (+)
LOC110496546 LOC106588814 coding downstream 224894 54322817 ~ 54409921 (+)
LOC110496545 LOC106588816 coding downstream 314847 54412770 ~ 54510923 (+)
LOC110496548 LOC106588817 coding downstream 456455 54554378 ~ 54576444 (+)
LOC110496549 LOC106588818 coding downstream 533462 54631385 ~ 54635257 (+)
G1561943 LOC106588811 non-coding upstream 31451 54044072 ~ 54053417 (+)
G1561891 NA non-coding upstream 169305 53915148 ~ 53915563 (+)
G1561864 NA non-coding upstream 172148 53912243 ~ 53912720 (+)
G1561843 mrpl3 non-coding upstream 189920 53887139 ~ 53894948 (+)
G1561987 NA non-coding downstream 20548 54118471 ~ 54118930 (+)
G1561989 NA non-coding downstream 23808 54121731 ~ 54144598 (+)
G1561990 NA non-coding downstream 24428 54122351 ~ 54165287 (+)
G1562039 NA non-coding downstream 87993 54185916 ~ 54186857 (+)
G1562066 NA non-coding downstream 124755 54222678 ~ 54223880 (+)
G1561856 NA other upstream 207938 53872173 ~ 53876930 (+)
G1561845 NA other upstream 243997 53817164 ~ 53840871 (+)
G1561544 LOC106588750 other upstream 796403 53277790 ~ 53288465 (+)
snrpd1 snrpd1 other upstream 905931 53175661 ~ 53178938 (+)
G1563547 NA other downstream 1040725 55138648 ~ 55139231 (+)
G1564470 NA other downstream 1810327 55908085 ~ 55908934 (+)
LOC110496862 LOC106588838 other downstream 1931015 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other downstream 1952665 56050588 ~ 56051793 (+)

Expression


Co-expression Network