G1562195


Basic Information

Item Value
gene id G1562195
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54526044 ~ 54528153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787321
TCTGGAATACATTTTATTAGCCATAATGTCTTCTTAATGGTGGAACCAGGACTTTTCTTCCAGAACTTTATTTCCACAATGAATCCATGCCATGATATGGCCAGTCGTCTTCCAGTAGGGGAGGACTTGCATTAGGCATTTAAACCAAATATTCACTAGTGTCCTAAAATACAGTGCCCATAGAAGGTCTACACTCCCCCTGAAATGTTTTTCCTACAGATCTACACAACCCACTCCACATTTTCAACGTGAAAGAAAGTTATTTGACCAAGTAACAGATATCATAATTGGATAAGTCTCTATCCTGAGTTAATACTTGGCGGATGCATCTATGGCAGCAATTACATCTGTGACTCATTTCCATTAAAGTTCTACCAAGTTggcacaactcttagggcaacatttATCCATCGTTTTTGTCAACATTGCCCAGgctcagtaaatttggttgggGATCACTGGTGGACAGCGATATTTAAACCTTGCCTCTGTTTTGTTGAAGCAGATTTAATTCTGGACAGactagaccactcaggaacacttAAACTCTTAGAAAGacttctgttgaaaaacattcaAGGATGTGTAGACGTTCTATAGGCACTGTATGTATCATCCTAGTGTGGTCAAGAGTAAACATTTAACAGGATCCTGCATCGCACTCTTTTATACCTCAAGATGTTCAGAAGAGAAAAACATTCCCTCAGACAGTCAACTGTAAAAATGGATTACCATACCACATACACTGTAGAGAAATTAAAATACCGACACGGGAGGAAATCTAGTTATTAGTCTAGGTCGAGAACAGTATATTTCCAATTTAAGGAAAATTGCACATCTTTATGAAAAGGTAAACAATGAAAATCACTTTGAAACAAAAACAACTACCATTCATATATCATTCAACAGTAGAGAAGTACACAGCATCCTGTGACTATCCTGCTGTGTTTCAGCATACCAAGCAGAGAGAAGCCAGTAAGACAAGTGCCCTAATACGGACTTTGGCCCACCATGCTGTGAGGCTTTGAGTGATGTAAATTGCACTGACCTGAGGGTCAAGGCCAGCTGACACCATTATAACCAATCATGCATCTGCGACTATCATTACACACTGATCTGGATGCTTTGGCCCACCTTCTCTGATATCAGAGTTAAGCACTATGAACTGCTCAGAGGTCAGATTTAGACCACCCCCATATGGTTAAGCTGTGAGAGGAGTGTGTGAGCTACACAGATTTGGTATTAACTCTACTCAGCTGTGCTCTACACCACATTACTGGTGCTattggtgatagtagtagtaaatGACAGAGAAAGCCTCTGCAGTGTTGGAATAGAAATGACATCCTAGTGATTACAGTGGTTGGAGTACatcaaaagaaaagaaaaagcaAATGCCTGTTAGTACTCAAAGTTCTGGAAATATATGGGCCTGTGTGAACCAATTCGTTTTGCCATCACAACTTCACTTGCTGTGACATACAGTTTCTCATTAAGTGTAATGTATATTCTTCTACTTGTGCAGGTTCCTCAAACATGGACattaaaatagaaacatacagtcCTACAAACCTACGGTGTCACAACAATATTTtcataattacatttttttttaattttaaagtTCCTGGGGAAACTTATTTTTCTTTTTTGGTTGTTGGTTCTGTTGTTTTGTGCTATAGGGTTGTAAAGAGGGTATGGTTCTAGTGAATGGTTGTTGGTTCTGTTGTTTTGTGCTATAGGATTGTAAAGAGGGAgctgaagaagggaggaggtgagacaaCAGAAAGAGGGGAGACAGAAGGGGAAAGAGGGTATGGTTCTAGTGAATGTCAGCCTAGCTAGGGGTCAGGGGTGAAAGGTCAGGCAGGTCTCAGTGAGGCTGTTCTTCCTGGGTGGCGATGGGTGTGGCCTCTGGCCGTTTCTCTACGGGAACAGAAGGGTCAGAGGTCGCTGTAGAGGTCAACACATCGCCAAAGTCACCCTGAGATGCCGTCGGG
>TU1787322
TCTGGAATACATTTTATTAGCCATAATGTCTTCTTAATGGTGGAACCAGGACTTTTCTTCCAGAACTTTATTTCCACAATGAATCCATGCCATGATATGGCCAGTCGTCTTCCAGTAGGGGAGGACTTGCATTAGGCATTTAAACCAAATATTCACTAGTGTCCTAAAATACAGTGCCCATAGAAGGTCTACACTCCCCCTGAAATGTTTTTCCTACAGATCTACACAACCCACTCCACATTTTCAACGTGAAAGAAAGTTATTTGACCAAGTAACAGATATCATAATTGGATAAGTCTCTATCCTGAGTTAATACTTGGCGGATGCATCTATGGCAGCAATTACATCTGTGACTCATTTCCATTAAAGTTCTACCAAGTTggcacaactcttagggcaacatttATCCATCGTTTTTGTCAACATTGCCCAGgctcagtaaatttggttgggGATCACTGGTGGACAGCGATATTTAAACCTTGCCTCTGTTTTGTTGAAGCAGATTTAATTCTGGACAGactagaccactcaggaacacttAAACTCTTAGAAAGacttctgttgaaaaacattcaAGGATGTGTAGACGTTCTATAGGCACTGTATGTATCATCCTAGTGTGGTCAAGAGTAAACATTTAACAGGATCCTGCATCGCACTCTTTTATACCTCAAGATGTTCAGAAGAGAAAAACATTCCCTCAGACAGTCAACTGTAAAAATGGATTACCATACCACATACACTGTAGAGAAATTAAAATACCGACACGGGAGGAAATCTAGTTATTAGTCTAGGTCGAGAACAGTATATTTCCAATTTAAGGAAAATTGCACATCTTTATGAAAAGGTAAACAATGAAAATCACTTTGAAACAAAAACAACTACCATTCATATATCATTCAACAGTAGAGAAGTACACAGCATCCTGTGACTATCCTGCTGTGTTTCAGCATACCAAGCAGAGAGAAGCCAGTAAGACAAGTGCCCTAATACGGACTTTGGCCCACCATGCTGTGAGGCTTTGAGTGATGTAAATTGCACTGACCTGAGGGTCAAGGCCAGCTGACACCATTATAACCAATCATGCATCTGCGACTATCATTACACACTGATCTGGATGCTTTGGCCCACCTTCTCTGATATCAGAGTTAAGCACTATGAACTGCTCAGAGGTCAGATTTAGACCACCCCCATATGGTTAAGCTGTGAGAGGAGTGTGTGAGCTACACAGATTTGGTATTAACTCTACTCAGCTGTGCTCTACACCACATTACTGGTGCTattggtgatagtagtagtaaatGACAGAGAAAGCCTCTGCAGTGTTGGAATAGAAATGACATCCTAGTGATTACAGTGGTTGGAGTACatcaaaagaaaagaaaaagcaAATGCCTGTTAGTACTCAAAGTTCTGGAAATATATGGGCCTGTGTGAACCAATTCGTTTTGCCATCACAACTTCACTTGCTGTGACATACAGTTTCTCATTAAGTGTAATGTATATTCTTCTACTTGTGCAGGTTCCTCAAACATGGACattaaaatagaaacatacagtcCTACAAACCTACGGTGTCACAACAATATTTtcataattacatttttttttaattttaaagtTCCTGGGGAAACTTATTTTTCTTTTTTGGTTGTTGGTTCTGTTGTTTTGTGCTATAGGGTTGTAAAGAGGGTATGGTTCTAGTGAATGGTTGTTGGTTCTGTTGTTTTGTGCTATAGGATTGTAAAGAGGGAgctgaagaagggaggaggtgagacaaCAGAAAGAGGGGAGACAGAAGGGGAAAGAGGGTATGGTTCTAGTGAATGTCAGCCTAGCTAGGGGTCAGGGGTGAAAGGTCAGGCAGGTCTCAGTGAGGCTGTTCTTCCTGGGTGGCGATGGGTGTGGCCTCTGGCCGTTTCTCTACGGGAACAGAAGGGTCAGAGGTCGCTGTAGAGGTCAACACATCGCCAAAGTCACCCTGAGATGCCGTCGGG

Function

NR:

description
tumor protein D53 homolog isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787321 False 2000 lncRNA 0.41 2 54526044 54528153
TU1787322 True 2000 lncRNA 0.41 3 54526044 54528153

Neighbor

gene id symbol gene type direction distance location
LOC110496545 LOC106588816 coding upstream 15121 54412770 ~ 54510923 (+)
LOC110496546 LOC106588814 coding upstream 116123 54322817 ~ 54409921 (+)
LOC118940998 NA coding upstream 267661 54254893 ~ 54258383 (+)
gmpr gmpr coding upstream 489330 54022282 ~ 54036714 (+)
LOC110496857 LOC106588809 coding upstream 518006 53983637 ~ 54008038 (+)
LOC110496548 LOC106588817 coding downstream 26225 54554378 ~ 54576444 (+)
LOC110496549 LOC106588818 coding downstream 103232 54631385 ~ 54635257 (+)
LOC110496550 LOC106588820 coding downstream 129253 54657406 ~ 54687881 (+)
LOC110496551 fam65b coding downstream 210100 54738253 ~ 54817359 (+)
armh2 cssa27h6orf229 coding downstream 295507 54823660 ~ 54827619 (+)
G1562140 NA non-coding upstream 186239 54339237 ~ 54339805 (+)
G1562121 LOC106588813 non-coding upstream 210704 54314229 ~ 54315340 (+)
G1562086 NA non-coding upstream 264947 54260873 ~ 54261097 (+)
G1562066 NA non-coding upstream 302164 54222678 ~ 54223880 (+)
G1562039 NA non-coding upstream 339187 54185916 ~ 54186857 (+)
G1562197 NA non-coding downstream 1475 54529628 ~ 54552380 (+)
G1562239 NA non-coding downstream 5241 54533394 ~ 54534406 (+)
G1562259 NA non-coding downstream 69244 54597397 ~ 54716118 (+)
G1562262 NA non-coding downstream 111765 54639918 ~ 54653110 (+)
G1562315 NA non-coding downstream 205391 54733544 ~ 54733822 (+)
G1561856 NA other upstream 649114 53872173 ~ 53876930 (+)
G1561845 NA other upstream 685173 53817164 ~ 53840871 (+)
LOC110514975 LOC106588804 other upstream 801380 53713836 ~ 53730416 (+)
G1561544 LOC106588750 other upstream 1237579 53277790 ~ 53288465 (+)
G1563547 NA other downstream 610495 55138648 ~ 55139231 (+)
G1564470 NA other downstream 1380097 55908085 ~ 55908934 (+)
LOC110496862 LOC106588838 other downstream 1500785 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other downstream 1522435 56050588 ~ 56051793 (+)
G1565672 NA other downstream 2503468 57031621 ~ 57031963 (+)

Expression


Co-expression Network