G1563266


Basic Information

Item Value
gene id G1563266
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54684013 ~ 54687483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788608
GTGAAAACCATACTCTGGCTGCATATAATACTCTTACAAGAACAACAAGAGAAACGTACACACCACTGATTTCCCCTGTGGGAGATATTTTATTCAGCAAGTTCAGACACCCAAATATAATATTCCTACTAAAGATTGAAACAGAAATGCCTGTTGTTCTGTAATGTATAGTGATGGACCTAGTCACTCATTGTGAAGTTAAACCTTTGATTTGTAaagtaacatgctatacaggaAATGTATATTTCAGTCACGTGGATGGACAGATTGAAGTTAATGAGTTCATTTGTTAAAATGTCACCAGTACTTGGAATCCATAGTTATGCAGTAATGTAGAGTAAAAATGATTGCAGAAAGTGAACCAACAGCAGTTGAAGATAGTGATATCACCAAGGGTGACATTGATAAAGTGATATCACCAAGGGTGACATTGATAAAGTGATATCACCAAGGGTGACATTGATAAAGCGATATCACCAAGGGTGACATTGATAAAGCGAGTGACACGGGTCGACCACAGTCCATATTGGCTCTGCCATAACCTGGCCAGAATAATTCCCAAATGTAAAAATGGATTAATGTGCTTtataggtgaaaaatctgtcgatgtgcaaGGCACCTATCCCTAATTGCCAATTTCAGTCACTCTGAaacagcatctgctaaattattaCAATTTCAAAAATGTACACCTGACCACTGAGAACTATAAAAAGTGACCAAAAAAAAAACCTCCAAAAACATTCACATAGCAGTCACACATCCATGGAAATGTTTCTGTTTCACATTCAGTTCATGTAATGCAAACAAATTGATTTGATTAACAGGTGACAGGACTTGGTAAACAGCTTTGGATGGAATTAGATAATTTATTAAAAAGGGTCAATATGCAATTGCTACATCGATTTTTagacttataaattaatgatatgtacccattgattcttgaagaatataaattATAAATGCCtgatgagcttagttcaactgacTTTCACCATTAGAACCGAGAAAAAGCTTACattttgtttgtaaacaaagtaaatgtaaacaaacggCCTCAAAATGGTTAAGACtgtcattttgatatcatggatggtcagtccttgcagtCCTTTGAGTGGCTATATttctccctcagctttttaccaaaacaggggcAGGGAGTACCcgttttatttaactcggcaagtcagttaagaacaaattcttatttacaatgacagcctacaggcCCAAACCCAGAATGCGCTGGGataattgtgcaccaccctatgggactcccaatcacggccggttgagatacagtctggattcgaaccagggtgtctgtagtgatacttctagcactgagatgcagtgccttagaccactgcgccacattGTTATAGTTAAAACtactgattgcccctttaaagcaaatttccaaTGACAAGATACATGCATACACCAATAAGAGACAGCGCATTCAGAACAACTACTTTTGGATGCTAGTGCCCAGAGTACAGTGATCCACAACATTGACTTGCTCTCAACAACCTGAAGTTCATAAAACTACCACTAGATGGTGCATAGAAATCAAATATGTCTCAGCCAGTAGATTTAATATTTGATCGGGCTTCTCAATGAATTGCATTGTAAAGGAGATGTTGCATTCCTCTAATCCTGCAAGCTGCATCAAATGTTCATCCAAATTGCATGAATGTGCATATTTACAGCATTGAATCCTACCAAATTCATGTTGTTGGATTTCTAGGtctataaaaaaataacaatagagAGCAAGACATGCATGACACCATGACAAGTCTATGGCAGAGAGGTCATGAATAGGATCGCCATCTCATgggtatattttttttatacaaaaaaataaaataaaaacattgagaCCAGTCCTCTGTATATTATTGGAAACACATCCTTTCTACATTTTCAGCAACTGTCCTTTTGGTTCTTCAGATAGGCTTATGGTTTGAAATGAAAACGTCAGTAAATGTAACATCTTAAAATCAAGCACAAAATTCAGTAAGTGCTGTTAACGTGCCACTGCTGGTGATTTCAACGCTGTCTTAGAGAGCCAGCTTGGTGTAATAAGGGCATAGGCTACAAGTCAATGTCATCTACAGGCCTACATGTTCCTTTCTGGACATCAATAGGGCAACCATGGTAACAGCTGTAACAATGTCAGTAACTGGTGATCTTGTAACATTTCCTGTGTGTGCCATGGTGTGCAAGGCCAATAGAATGATAGCATCCATGTGAGGCCGAAATTGGGCAATCGGCAACAGTAACTAAATTACTATCACCTGACAGATTAATGGTGAGAAATAACACAGTAAAGAGAAAATGCAATCTATTCTTATGAGAATGAGCATGTGTCAGAGACAATCTCTTATCTTGGTTTGGTAGAGAGGAATAAAGAAGATAAAAAAGGACATTACAAAGTGGTCACAGAATATGGACCACTTTGTTCttctggggcagcaggtagcctagtggttagagcgctggactagtaaccgaaaggttgcaagatcgaaaccccgagctgacaaggtaaagcgCTGTTGTtcaggccatcattgaaaataagaatgtgttcttaaatcgacttccctagttaaataaaggtaaaataaaataaaaattcacCGTCTGTCAGCTTCACCAATAAACATTACTTTGATGCCATAACGGCTCAACCCATGGCAGTTTCCATATAGTACATGAGTCAGTCACTTGACAGCCACTAAGTTGGAGAAATCTTCAATGACCAGTAAACAACCAGACAGGCAGTTTGTGCACACACACCACCTGGCCTAGTGCAAGTATGGCCAGAATGGGCATCTTTGACTGACACTTCCATCTTTCAAAACAAATAACTAatttaatatttaaaaaatatcaaTTTTCCACTAGCTTTATTCAGTAGGTCCTgctgatgaaaacctactcctcCTAAATGGTCAGTAGGGCCTGTTCAAATCTCCATTTGATATTCTTGCGTTGTTAAATGGTTAAACTCCCATGGTTGATCGTCTCCATAGGTGTAACCAGTAGGAGTGAACTACATTGTGCTGCATGCATGTGGTTGTCAGAGTCCACCGGCACTAGAAAGTGGCTTTCCTcagcactgaacacacacacactgtacagtccCATAGGACAAGCAAGTCACACATTATTAATAATAAAGTCCTGGCAAAAAATTAATTCAAAACAAATGTTCATCATTGGCACAGAAGGAGTGCAGCTGTGATTGTGGTCTGCCTGTTTCCACCTTTGGctcagtatctacctccatccctccacaccTCCTTTCATCCCTCACTCCAGCTTCTCCTCAGGGATGTTGTCCAGGTCTAGGTCACGTGAGGCCACACAGCACAGACACAGCTTCTGGGTGTTCA
>TU1788609
GTGAAAACCATACTCTGGCTGCATATAATACTCTTACAAGAACAACAAGAGAAACGTACACACCACTGATTTCCCCTGTGGGAGATATTTTATTCAGCAAGTTCAGACACCCAAATATAATATTCCTACTAAAGATTGAAACAGAAATGCCTGTTGTTCTGTAATGTATAGTGATGGACCTAGTCACTCATTGTGAAGTTAAACCTTTGATTTGTAaagtaacatgctatacaggaAATGTATATTTCAGTCACGTGGATGGACAGATTGAAGTTAATGAGTTCATTTGTTAAAATGTCACCAGTACTTGGAATCCATAGTTATGCAGTAATGTAGAGTAAAAATGATTGCAGAAAGTGAACCAACAGCAGTTGAAGATAGTGATATCACCAAGGGTGACATTGATAAAGTGATATCACCAAGGGTGACATTGATAAAGTGATATCACCAAGGGTGACATTGATAAAGCGATATCACCAAGAGTGACATTGATAAAGCGATATCACCAAGGGTGACATTGATAAAGCGAGTGACACGGGTCGACCACAGTCCATATTGGCTCTGCCATAACCTGGCCAGAATAATTCCCAAATGTAAAAATGGATTAATGTGCTTtataggtgaaaaatctgtcgatgtgcaaGGCACCTATCCCTAATTGCCAATTTCAGTCACTCTGAaacagcatctgctaaattattaCAATTTCAAAAATGTACACCTGACCACTGAGAACTATAAAAAGTGACCAAAAAAAAAACCTCCAAAAACATTCACATAGCAGTCACACATCCATGGAAATGTTTCTGTTTCACATTCAGTTCATGTAATGCAAACAAATTGATTTGATTAACAGGTGACAGGACTTGGTAAACAGCTTTGGATGGAATTAGATAATTTATTAAAAAGGGTCAATATGCAATTGCTACATCGATTTTTagacttataaattaatgatatgtacccattgattcttgaagaatataaattATAAATGCCtgatgagcttagttcaactgacTTTCACCATTAGAACCGAGAAAAAGCTTACattttgtttgtaaacaaagtaaatgtaaacaaacggCCTCAAAATGGTTAAGACtgtcattttgatatcatggatggtcagtccttgcagtCCTTTGAGTGGCTATATttctccctcagctttttaccaaaacaggggcAGGGAGTACCcgttttatttaactcggcaagtcagttaagaacaaattcttatttacaatgacagcctacaggcCCAAACCCAGAATGCGCTGGGataattgtgcaccaccctatgggactcccaatcacggccggttgagatacagtctggattcgaaccagggtgtctgtagtgatacttctagcactgagatgcagtgccttagaccactgcgccacattGTTATAGTTAAAACtactgattgcccctttaaagcaaatttccaaTGACAAGATACATGCATACACCAATAAGAGACAGCGCATTCAGAACAACTACTTTTGGATGCTAGTGCCCAGAGTACAGTGATCCACAACATTGACTTGCTCTCAACAACCTGAAGTTCATAAAACTACCACTAGATGGTGCATAGAAATCAAATATGTCTCAGCCAGTAGATTTAATATTTGATCGGGCTTCTCAATGAATTGCATTGTAAAGGAGATGTTGCATTCCTCTAATCCTGCAAGCTGCATCAAATGTTCATCCAAATTGCATGAATGTGCATATTTACAGCATTGAATCCTACCAAATTCATGTTGTTGGATTTCTAGGtctataaaaaaataacaatagagAGCAAGACATGCATGACACCATGACAAGTCTATGGCAGAGAGGTCATGAATAGGATCGCCATCTCATgggtatattttttttatacaaaaaaataaaataaaaacattgagaCCAGTCCTCTGTATATTATTGGAAACACATCCTTTCTACATTTTCAGCAACTGTCCTTTTGGTTCTTCAGATAGGCTTATGGTTTGAAATGAAAACGTCAGTAAATGTAACATCTTAAAATCAAGCACAAAATTCAGTAAGTGCTGTTAACGTGCCACTGCTGGTGATTTCAACGCTGTCTTAGAGAGCCAGCTTGGTGTAATAAGGGCATAGGCTACAAGTCAATGTCATCTACAGGCCTACATGTTCCTTTCTGGACATCAATAGGGCAACCATGGTAACAGCTGTAACAATGTCAGTAACTGGTGATCTTGTAACATTTCCTGTGTGTGCCATGGTGTGCAAGGCCAATAGAATGATAGCATCCATGTGAGGCCGAAATTGGGCAATCGGCAACAGTAACTAAATTACTATCACCTGACAGATTAATGGTGAGAAATAACACAGTAAAGAGAAAATGCAATCTATTCTTATGAGAATGAGCATGTGTCAGAGACAATCTCTTATCTTGGTTTGGTAGAGAGGAATAAAGAAGATAAAAAAGGACATTACAAAGTGGTCACAGAATATGGACCACTTTGTTCttctggggcagcaggtagcctagtggttagagcgctggactagtaaccgaaaggttgcaagatcgaaaccccgagctgacaaggtaaagcgCTGTTGTtcaggccatcattgaaaataagaatgtgttcttaaatcgacttccctagttaaataaaggtaaaataaaataaaaattcacCGTCTGTCAGCTTCACCAATAAACATTACTTTGATGCCATAACGGCTCAACCCATGGCAGTTTCCATATAGTACATGAGTCAGTCACTTGACAGCCACTAAGTTGGAGAAATCTTCAATGACCAGTAAACAACCAGACAGGCAGTTTGTGCACACACACCACCTGGCCTAGTGCAAGTATGGCCAGAATGGGCATCTTTGACTGACACTTCCATCTTTCAAAACAAATAACTAatttaatatttaaaaaatatcaaTTTTCCACTAGCTTTATTCAGTAGGTCCTgctgatgaaaacctactcctcCTAAATGGTCAGTAGGGCCTGTTCAAATCTCCATTTGATATTCTTGCGTTGTTAAATGGTTAAACTCCCATGGTTGATCGTCTCCATAGGTGTAACCAGTAGGAGTGAACTACATTGTGCTGCATGCATGTGGTTGTCAGAGTCCACCGGCACTAGAAAGTGGCTTTCCTcagcactgaacacacacacactgtacagtccCATAGGACAAGCAAGTCACACATTATTAATAATAAAGTCCTGGCAAAAAATTAATTCAAAACAAATGTTCATCATTGGCACAGAAGGAGTGCAGCTGTGATTGTGGTCTGCCTGTTTCCACCTTTGGctcagtatctacctccatccctccacaccTCCTTTCATCCCTCACTCCAGCTTCTCCTCAGGGATGTTGTCCAGGTCTAGGTCACGTGAGGCCACACAGCACAGACACAGCTTCTGGGTGTTCA

Function

NR:

description
Y+L amino acid transporter 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788608 False 3413 lncRNA 0.39 2 54684013 54687483
TU1788609 True 3442 lncRNA 0.39 2 54684013 54687483

Neighbor

gene id symbol gene type direction distance location
LOC110496860 LOC106588819 coding downstream 31081 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 131696 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 366389 54316124 ~ 54317624 (-)
LOC110496544 LOC106588813 coding downstream 368368 54314224 ~ 54315645 (-)
LOC110496543 LOC106588812 coding downstream 397436 54280544 ~ 54286577 (-)
LOC110496552 gmnn coding upstream 140234 54827717 ~ 54839922 (-)
LOC118941190 LOC106588825 coding upstream 154951 54842434 ~ 54853844 (-)
LOC110496559 LOC106570512 coding upstream 2017369 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 2040858 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 2371054 57058537 ~ 57061029 (-)
G1563255 NA non-coding downstream 17348 54665729 ~ 54666665 (-)
G1563234 NA non-coding downstream 74313 54606755 ~ 54609700 (-)
G1563217 NA non-coding downstream 116403 54557544 ~ 54567610 (-)
G1563100 NA non-coding downstream 312706 54369121 ~ 54371307 (-)
G1563284 NA non-coding upstream 32732 54720215 ~ 54720509 (-)
G1563272 NA non-coding upstream 127378 54814861 ~ 54817329 (-)
G1563328 NA non-coding upstream 185303 54872786 ~ 54873168 (-)
G1563369 NA non-coding upstream 247207 54934690 ~ 54934917 (-)
G1563370 NA non-coding upstream 247773 54935256 ~ 54935466 (-)
G1563253 NA other downstream 18370 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 789064 53887137 ~ 53895002 (-)
G1562828 NA other downstream 808421 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 931330 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 1793985 56481468 ~ 56488289 (-)
G1566899 NA other upstream 3340028 58027511 ~ 58027790 (-)
G1566923 NA other upstream 3388140 58074209 ~ 58078146 (-)
G1566972 NA other upstream 3479901 58167384 ~ 58167697 (-)

Expression


Co-expression Network