G1563272


Basic Information

Item Value
gene id G1563272
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54814861 ~ 54817329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788615
TGCCACTTTCATTGAGCAGGAGAAATACTGTAAACCAATAGGAGAAAATAATGTAATGCAGTCTACTGAAGCTATGTGACATGACCTTTCTGTGTGCTTTCTGTTCAAGTCCAAGGTTTACcataatgtaaagatataatgcAAATCATGTGTGGTTACATAAAATATGATGAATATTAAACAACGTTGAATTATTTGACCTACGTCTTTAATCTGATGACTTGGATTGGAATAGAAGCAAAATGTCAATTCACAACACTGGTCATTTTTAGTAGAAAGTAAGCAGAGGCCtcgtggagaaaaaaaaaacaaggatgTTGTTAGAGTTAGTCCTTGAAGTAACTAGTATCATCTTACTAAAATACTGTAATGTTATTCACATCATGGGAGAAACAGGCATTGTTACTCAAAATATAGACCATGTTCAACGAACACAAGGCCACACTTTGACATAGAACAACAAAAAGCCATCTTCAATTTGAAAAACTCACACTTAaaataacattatCACACATATTACTGCCTTAAATACACCTATTTCATCGCTATGGCTTTTGGAGAGTGTGCAATTAGTTAGAACCCGATGTAATGTCGCAGGATTGGGATGATCATTTAGATAACATTGATTAATATTGTTGTGCTTTTCAGGTGAGTCTGGGTGTAGAGGCCAGGTTGCAGATAGGTTCATGATTCATTCTTACAAAAGATGATTCTCTTAGATTCAGGCTTTACTTTGGTTATGAGTCACTTGCGTAATAAAGAAAGATTCTCTAATATCTACGGTCCCATTTGGACCAAAGCTATATGATATTGGCAAATCCTCTCCAGATAATAACCAGCCATTCATTCTACTTACAGGAAGAATCCACTCAAACAGCTTTTTGGTATTTCTTTTCATTAGTCTACTGTTGATACTGtcccaaaatatagtttttgagtggatttttcctttaaaACGCATAGACAAATTCCAAAAGAGCTAAACAAATCCACATTTTGAGTTACATTATATGTAAGCAAGATCATTCCCAAAATGAATTTGAGGCCAATATTTGAAATGTCAACCAGAAGCAGAAAATGAAACAATTTTACTAGTATCTGCATTCTGCCCTCTTACTCAAAAAAGTACATGCAAATGAAAGAATATTAGAATCCAAAATGTGACGtgtaaataagtaaataaattaGGTCGAGAAACAAACATGTTTTGTTGTCGTGGCAAAGAGGCCACGGACTCAGTAGTATAGTTACAATAGGCATAAGAAGCTATACGGAGTACTATAGCCTCGGCAACATCCCAACTTATACAAACCCCTTGGTTCTGATCTGTACCGCTATGGAGCAGTTACGTTCTCATTTCTCACTAACATTACCTCACTAACACATACTCCTAGACTGCATTAGTACCAATAGGATGAAAAGAGCAGTACATGTAGTAATGGGCACATGCATGGAGGCCAACCTGCTTCCAAAACAATAGATTCTGATCAATCTCCTCCAGTGGCTTAAACAACTGATCTCAAATCAGTTCCCAGCAAGCAGACATTCAATCAAACTCTGAATGCAGATCCCAGGCATGTGTGGGTAGAAGAGTTTGTTAAGCAGTCCAAGTATATGATTCTCTCCACGTTGTGCATGTTGATGAAGTGAGGACATTGCTGGCCGGTAAGACACCGTCTTCCTCTTTTTGCATGTTGATGACGTGAGATTGCGAACATTGCTTAACTACCTCCTCCTGAGCAACCTGAATCTGTCTTCTGACTTCTCATCCATGACACACTGACAGAAAGTGTTCAAACGGTCTGTAAAATCCCTGAAACTCAACGATGCATATCAGAAAAACACCAACTCGATCCATTTCGATGCGTCACTCATTATCACACAGAGTTTAATGCTGTGCTATGATATTTACATGCCTGCCACAGTGCAATTCAAAAGTACAAATAGCCGTCGACTAATGTGAACGTCACTtactaaaacaaataattaaTAGCAGTTATATAAAGCAACCATAACTGTGATACTGATAATAACAATGTCAAACACAACCGTGATAATAAGATTCATAATAATAGTTATGATAGTAAATAGGCTCTGTCTGTGCAGTGAGAGATTGCTTAATAGTGGTGGTCAGTGGACAGCTAGGATTTAGACCAGTCTGTTGAGAAGGATGAGACATGTGGCCCTTTGATGATGAGTTGGGCTCCTCTGCTTTGATCAGGCCCCTCCCCCTAGCTGTGTCCATTCAAATGTTCAGGCAAGGTGGAGGGAGGCCCGGACTGTTGGGGGTGAGGGGGTTGTCCCCCTCCTGTGGTTATGATGCTCCTAGGTTAAGTTAATTAGACCTGTGCTTTCAGAAGGCAGTGGTGACAGCGGTCCCTCGCCTTGTCCCCAGTTGTACCAGCTCCCTGGGCACCGTGTCCAGCTGCTCATACGCCAGACGCCC

Function

NR:

description
protein FAM65B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788615 True 2446 lncRNA 0.39 2 54814861 54817329

Neighbor

gene id symbol gene type direction distance location
LOC110496860 LOC106588819 coding downstream 161929 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 262544 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 497237 54316124 ~ 54317624 (-)
LOC110496544 LOC106588813 coding downstream 499216 54314224 ~ 54315645 (-)
LOC110496543 LOC106588812 coding downstream 528284 54280544 ~ 54286577 (-)
LOC110496552 gmnn coding upstream 10388 54827717 ~ 54839922 (-)
LOC118941190 LOC106588825 coding upstream 25105 54842434 ~ 54853844 (-)
LOC110496559 LOC106570512 coding upstream 1887523 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 1911012 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 2241208 57058537 ~ 57061029 (-)
G1563284 NA non-coding downstream 94352 54720215 ~ 54720509 (-)
G1563266 NA non-coding downstream 127378 54684013 ~ 54687483 (-)
G1563255 NA non-coding downstream 148196 54665729 ~ 54666665 (-)
G1563234 NA non-coding downstream 205161 54606755 ~ 54609700 (-)
G1563217 NA non-coding downstream 247251 54557544 ~ 54567610 (-)
G1563328 NA non-coding upstream 55457 54872786 ~ 54873168 (-)
G1563369 NA non-coding upstream 117361 54934690 ~ 54934917 (-)
G1563370 NA non-coding upstream 117927 54935256 ~ 54935466 (-)
G1563372 NA non-coding upstream 119730 54937059 ~ 54937506 (-)
G1563377 NA non-coding upstream 125816 54943145 ~ 54943722 (-)
G1563253 NA other downstream 149218 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 919912 53887137 ~ 53895002 (-)
G1562828 NA other downstream 939269 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 1062178 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 1664139 56481468 ~ 56488289 (-)
G1566899 NA other upstream 3210182 58027511 ~ 58027790 (-)
G1566923 NA other upstream 3258294 58074209 ~ 58078146 (-)
G1566972 NA other upstream 3350055 58167384 ~ 58167697 (-)

Expression


Co-expression Network