G1562377


Basic Information

Item Value
gene id G1562377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54830351 ~ 54831448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1787547
atggtcagatgaagcagatactaaactacaggactgctttgctatcacagactggagtatgagccgggattcttccgatgacattgaggaatacaccacatcagtcactggctttatcaataagtggaTTGAGGACGTCgtacccacagtgactgtacgtacatactggtaatggctcacatcaacaccattatcccagaaaccctagacccactccaatttgtataccgcccaaacagatccacagatgatgcaatctctattgcacgccacactgccctttcccacctggacaaaaggaacacctatgtgagaatgctgttcattgaccacagctcagtgttcaacaccattgtaccctcaaagctcatcaccaagctaaggatcctgggactaacacctccctctgcaactggatcccggacttcctgacggctgcccccaggtggccagggtaggt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1787547 True 460 lncRNA 0.49 2 54830351 54831448

Neighbor

gene id symbol gene type direction distance location
armh2 cssa27h6orf229 coding upstream 2732 54823660 ~ 54827619 (+)
LOC110496551 fam65b coding upstream 12992 54738253 ~ 54817359 (+)
LOC110496550 LOC106588820 coding upstream 142470 54657406 ~ 54687881 (+)
LOC110496549 LOC106588818 coding upstream 195094 54631385 ~ 54635257 (+)
LOC110496548 LOC106588817 coding upstream 253907 54554378 ~ 54576444 (+)
tppc3 tppc3 coding downstream 22458 54853906 ~ 54859078 (+)
LOC110496553 LOC106588826 coding downstream 220427 55051875 ~ 55171394 (+)
LOC110496554 LOC106588828 coding downstream 342258 55173706 ~ 55213167 (+)
LOC110496862 LOC106588838 coding downstream 1197422 56028870 ~ 56504444 (+)
LOC110496558 LOC106588839 coding downstream 1737912 56569360 ~ 56704104 (+)
G1562366 NA non-coding upstream 22981 54805589 ~ 54807370 (+)
G1562341 NA non-coding upstream 65713 54764248 ~ 54764638 (+)
G1562329 NA non-coding upstream 84162 54745750 ~ 54746189 (+)
G1562315 NA non-coding upstream 96529 54733544 ~ 54733822 (+)
G1562259 NA non-coding upstream 114233 54597397 ~ 54716118 (+)
G1562398 NA non-coding downstream 31349 54862797 ~ 54863017 (+)
G1563371 NA non-coding downstream 105376 54936824 ~ 54937486 (+)
G1563478 NA non-coding downstream 214957 55046405 ~ 55046605 (+)
G1563607 NA non-coding downstream 454496 55285944 ~ 55287562 (+)
G1563621 NA non-coding downstream 476977 55308425 ~ 55308791 (+)
LOC110496545 LOC106588816 other upstream 319605 54412770 ~ 54510923 (+)
G1561856 NA other upstream 953421 53872173 ~ 53876930 (+)
G1561845 NA other upstream 989480 53817164 ~ 53840871 (+)
LOC110514975 LOC106588804 other upstream 1105687 53713836 ~ 53730416 (+)
G1561544 LOC106588750 other upstream 1541886 53277790 ~ 53288465 (+)
G1563547 NA other downstream 307200 55138648 ~ 55139231 (+)
G1564470 NA other downstream 1076802 55908085 ~ 55908934 (+)
G1564638 LOC106607612 other downstream 1219140 56050588 ~ 56051793 (+)
G1565672 NA other downstream 2200173 57031621 ~ 57031963 (+)

Expression


Co-expression Network