G1563377


Basic Information

Item Value
gene id G1563377
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 54943145 ~ 54943722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1788732
ttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttaaggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcgtttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaatttgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatgggttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaag

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1788732 True 578 lncRNA 0.45 1 54943145 54943722

Neighbor

gene id symbol gene type direction distance location
LOC118941190 LOC106588825 coding downstream 89301 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 103223 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 290213 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 390828 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 625521 54316124 ~ 54317624 (-)
LOC110496559 LOC106570512 coding upstream 1761130 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 1784619 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 2114815 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 2124118 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 2129740 57073462 ~ 57109628 (-)
G1563372 NA non-coding downstream 5639 54937059 ~ 54937506 (-)
G1563370 NA non-coding downstream 7679 54935256 ~ 54935466 (-)
G1563369 NA non-coding downstream 8228 54934690 ~ 54934917 (-)
G1563328 NA non-coding downstream 69977 54872786 ~ 54873168 (-)
G1563272 NA non-coding downstream 125816 54814861 ~ 54817329 (-)
G1563630 NA non-coding upstream 117544 55061266 ~ 55064066 (-)
G1563704 NA non-coding upstream 220671 55164393 ~ 55237210 (-)
G1563710 NA non-coding upstream 237769 55181491 ~ 55198928 (-)
G1563671 NA non-coding upstream 248267 55191989 ~ 55213158 (-)
G1563761 NA non-coding upstream 344471 55288193 ~ 55289118 (-)
G1563253 NA other downstream 277502 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 1048196 53887137 ~ 53895002 (-)
G1562828 NA other downstream 1067553 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 1190462 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 1537746 56481468 ~ 56488289 (-)
G1566899 NA other upstream 3083789 58027511 ~ 58027790 (-)
G1566923 NA other upstream 3131901 58074209 ~ 58078146 (-)
G1566972 NA other upstream 3223662 58167384 ~ 58167697 (-)

Expression


Co-expression Network