G1563671


Basic Information

Item Value
gene id G1563671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55191989 ~ 55213158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1789049
aatgtctttatttatCTTAAAACCAATAGGAATGTCTTCAAAATGGGTACAATGATAAAATAACTGACCATTTGCTTTCTTTTCCACCTACTTTCCTTCAGAGTAGGGATTAACAGTTGTAtcattgagagtgtgtgtgtgtgcatctgtgtgtgtgcttgaaacTGTGTGCGTGTGCAGTCATTGTAAGGAAGTCTTATTGTAAACCCAGTAAGCAGCATTGATGAATGGAAAAAAGTACCTACAGTAAGACTAGCCAAGTGTCTTCCTGTGAAactgtctctatgggtgtgtgtgtgtgtgtgtgtgtgtgtccgtgtgtgtgtgtgtgtcagacagtgTAGAAGAAAAAGAGCCTAATTACAAAAAGTGACTGACTGGTGAAATATTGGGACTGATCTTTATTTGCATGTTAGTCAGGGACAAAGCAGTGGGTGAATTGCGTGCTTGACAGACCGGTCCCATTAACAAGAAACGATCAGCTGTGGGACTGGATGTGTGCCAATGAAAGAGACTGCCTGCACAgcttaaagagagagaggaaagacctGCTACAATGGGACACTAATCAACTGACAAGGTCTCTTATGTATACTCTATGTACA
>TU1789050
aatgtctttatttatCTTAAAACCAATAGGAATGTCTTCAAAATGGGTACAATGATAAAATAACTGACCATTTGCTTTCTTTTCCACCTACTTTCCTTCAGAGTAGGGATTAACAGTTGTAtcattgagagtgtgtgtgtgtgcatctgtgtgtgtgcttgaaacTGTGTGCGTGTGCAGTCATTGTAAGGAAGTCTTATTGTAAACCCAGTAAGCAGCATTGATGAATGGAAAAAAGTACCTACAGTAAGACTAGCCAAGTGTCTTCCTGTGAAactgtctctatgggtgtgtgtgtgtgtgtgtgtgtgtccgtgtgtgtgtgtgtgtcagacagtgTAGAAGAAAAAGAGCCTAATTACAAAAAGTGACTGACTGGTGAAATATTGGGACTGATCTTTATTTGCATGTTAGTCAGGGACAAAGCAGTGGGTGAATTGCGTGCTTGACAGACCGGTCCCATTAACAAGAAACGATCAGCTGTGGGACTGGATGTGTGCCAATGAAAGAGACTGCCTGCACAgcttaaagagagagaggaaagacctGCTACAATGGGACACTAATCAACTGACAAGGTCTCTTATGTATACTCTATGTACA
>TU1789052
aatgtctttatttatCTTAAAACCAATAGGAATGTCTTCAAAATGGGTACAATGATAAAATAACTGACCATTTGCTTTCTTTTCCACCTACTTTCCTTCAGAGTAGGGATTAACAGTTGTAtcattgagagtgtgtgtgtgtgcatctgtgtgtgtgcttgaaacTGTGTGCGTGTGCAGTCATTGTAAGGAAGTCTTATTGTAAACCCAGTAAGCAGCATTGATGAATGGAAAAAAGTACCTACAGTAAGACTAGCCAAGTGTCTTCCTGTGAAactgtctctatgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcccgtgtgtgtgtgtgtgtcagacagtgTAGAAGAAAAAGAGCCTAATTACAAAAAGTGACTGACTGGTGAAATATTGGGACTGATCTTTATTTGCATGTTAGTCAGGGACAAAGCAGTGGGTGAATTGCGTGCTTGACAGACCGGTCCCATTAACAAGAAACGATCAGCTGTGGGACTGGATGTGTGCCAATGAAAGAGACTGCCTGCACAgcttaaagagagagaggaaagacctGCTACAATGGGACACTAATCAACTGACAAGGTCTCTTATGTATACTCTATGTACA
>TU1789048
AAAATTCACTCcgttgggcctcccgagtggcgcagcggtctacagaccaggcgtcactacagacccgggttcaatcccaggctcaATCACAAATGGaagtgatcgggagtcccatagggcggcgcacaattgttacagtgtcgtccgggttaggggagggtttggccgggggagcTTTACGTGGCTCaacgcgctctagcgactccttgtggcgggccggacgCCTGCATGCTGATTTCGGtagtcagttgaacggtgtttcctctgacacattggtgcagctggcttccgggttaagcgggtgggtgttaagaagcgtggtttggtgggttatgttttggaggacgcatgactcaaccttcgcctcccgagccagttggggagttgcagcgatgagacaagatctaaattggggagaaaaaacatTGTATAATTTAAATTGTTCTGTCTTTATCAAACAAATATTTTTGTGTATTCTCAGTGTGGAACCTGTATGTTAAAGTCTAACCAATTCAAAATGGCACAAGCAGTTCGCAAAGTAGCCAAAGCGGAAAGTAGACAGGACAATTATTCAAAAACTGCAGCTCGTTGTTGAAACGCATAATTTCTTTCGTCTATCAACCAGTCCATTTAGAATTTTTCTGTAGGTCTAACGGGAGATTTTGCGCGGTGTGTAGAGTGGTCGCAAAGCAAGTGGTCGCAACGCAATTAagtgaatgagagaggagaaagggaattTAGGGAGAAGAACTGTGATGCTtggctttttttttgtgtgtgccgcaaatgcacatgtacaaatggaacactagtcaaaGCGAATTAAGATCGTCTTCCAGATAACATTTTAGTGGCCAAAAAGCACATAACACCAAATCTCTGAATACTCCAACGGACGTCATCGCTAGTCATTAGATGGGTCTCACTAACCACAATTAAGCCCACTTACACACATCCATCTCGCCacttacattcacacacacacacacacaccctcaccggCCCAGCCCCGCCACACAATGCACAGCGATGCAGCAGCCAGGCTCGTCTCGGAACTTGGTCTTCAGCAGGTTCAGCCAGTCATCCACTATCTGGGTGGGGGGCGGGGCACCATCATCAAAGGGCCAGTCCTACAGAGGCAGAGGAACAAAAATTTAAACATGGATCAAACCAGGGGCTAGGGGTTATTTTAACCAGTGGTCAATGCTGAAGGTCAGTACAGGATAATTCAAAGCCTGATTGAAGAATTAGAGCAGCTTTGTCCATTATGCGATATCATGTGTGTCTAAGTTGGAAAGCTTGATATGCTGAGTAATGTGTCCTGGCAGACAGCCTGACCCCTGTATATCCGTCTGAGCCTCTATACTCGTGCTGACCCAGTGTCTCTGCCACGGCTCAGCACAGATCACAGCCGTGCGCAACCCTACACAAGGCTATTCCCGTCTTGGTGCTCAAACAATATAAAAAATGGATTGTGATCATAATTACTGCCACACTCCAatggaagacagggagaggaatgCTCCAGGATGAGGGGTGGTGATCACTGTATTAAAACTATATCAACGACGGGATAGGATATTTCCTCACCCAAACAAGGTTTCTCTGGCCTTCCATAAATCACCTGTGAGACCGCTGAATACTAGCCTAAGCTTTGAGAAGAGACAATAGAGGGCACagaagacagaaacagacagagcaaGAAGGCCTGGGTGGAGCCTCATTCATGTGGATCTGAGCCAGAGATTccttctcttctccacctcttAGCTCAGCACACAGTGGCAGGCAGACAGTTGAGGACAAATGAAAACAGACAGATAACAGGGAAGGTCTCCAGAGAGGGAAAACCACCTGTTTAACTTGACATTccatggaagaaaaaaaacagcaaaTTCAACTCCCTAAAATTCCTAGGAGGCATTCAGTTCAGTAGAAATTCTTTCTGCTCTCTAGGTGTGTGTGGTTGTAATCTGCTCCACCAGCCGGCTCTCGCTGTCGACTATCTGGCTTCACATCACCTCAGAATGGAACTTGAATAGAAAATCCATTGGGCTTCCCAAAAACGATACGTTTAAACGCCCACACCAGTAGAAATCCACTTTTTCAAGCAGAAAGACGATGCCCAGAGCTTACCAATGATGTTGCACAATGATTTAAGTCAACAAGTatgtgaccaaggcccttctacaccgattgctcagtttgacagggcggccagctctaggaagagtcttggtggttccaaacttcttcaatgtaagaatgatggaggccactgtgttcttggggaccttcaatgctgcagattttGTACTCTTCCCGAGAGCTATGCCTCGACAatatcctgtctcggagcttttACGGACAATTCCGTCAACCTGACAGCTTGGTTTtcgcactgtcaactttgggaccttatatagatggGGGAAGCATTGTATTAAGTCCCATCTAAATCAACTGCCACCTCGATTTAGATCCACGCCTCAGTCGTGTGATTCGCTCAGAATTTGAATTGATTGGCATGTCACTCAGTAAATCCACACCCCTAAAATTCCAAACAGTCCCACACTTACCAGGCTCTATGCGCTAGCAAGTCAAGTCTGGGGACgaggttaatgtgtgtgtgtataatcctTACCACGACCTCGATCCCCCCCTTCTCCACTGGGGCCTTGTCGTAGGTGGCGTCACACACTCTCACCAGCGTGCTCACCTCAAACTTCTTCAGCTCCTGAGACAGacacaaatagacacacagacagagtcagagacaggcagagtcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagacaggcagagagagaccgacacagagacaagaggggagagacacagacagacagagacaggcagacagacagagacagagagtggcagagacagagagtggcagagacagagagtggcagagacagagagaggcagagacagagagaggcagagactaTCAGCACAGATATCTTGCACTAAAAATATTTATGTTTAATTGTAGGTTGAGCTGAGGGGAGATTGTTATAGGCTACTTTGGTGAAGTTATTGATGCACGTACATACAGTCAGACGTGTATGACACTCCACAGTGAACTTGAGTGTGGAATTGACAAGGTTATACATGCAGACCCTACATGACAACGCAAAAGCAAcaaacacgcccacacacacacaaggtggcAGCCTCACCTCGGTAAACTTGTTGAGCGTGGCGTTGGTGGGGTTGTGTGTGATGAGGAACCTCATGCCCTCGTAGGCAATCTCCACTGCTGCAGGGCGGTTCATGTTGGCGAGACGGCTTTGAAAACAATTACAATAAAATACTTAATCTCTTACAAGAAGGATGACTACTTTTGGCTCAGATGTCAGCAAGGACTTCTAGTAGGATTCAGTAggttcaaaaaataaataaaaacacgacgaagggaggagggggatgtGGGATGGTAACACCTGtggatgttttaaaaaaaaagaggGGTAACAAAAAATATGGATGATGTAATCCACAAGACTCCACAGGGGcggggtaaaaataaaaataataaaaaaattggGGAGACTATCCACGAGTCATCCAATCGGACATTCAGATTTTACCCCATTCAGGAGAGCGGTATGTGATTGGCTTCTGGGAGAGAAAGCAGGAAGTAGAAGAGAACTGAGCAGTTTTCTTATTGGCGGCTCAGGGGACAGAGCTAGGCGATCTGGCCAAGGACTACGCGGTATCCCAGGGGATCGTTGGAGGAGACCGGGATTCCCAGTGTGCTGGCTTCAGGGGGGCTTCTGGGTAGCGTAGTCCCGAGGGGGGCGGACGATTCACTTGTCCACGAAGGCGAGGTGCTGTGCCTGGCAAAAGTCTCCACTGACACTCACATACGCCATATATGTATGGCCCAAATCAACACAGA

Function

NR:

description
protein tyrosine phosphatase type IVA 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1789049 False 605 lncRNA 0.41 2 55191989 55213158
TU1789050 False 603 lncRNA 0.41 2 55191989 55213158
TU1789052 False 609 lncRNA 0.42 2 55191989 55213158
TU1789048 True 4038 lncRNA 0.48 2 55201967 55206024

Neighbor

gene id symbol gene type direction distance location
LOC118941190 LOC106588825 coding downstream 338145 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 352067 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 539057 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 639672 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 874365 54316124 ~ 54317624 (-)
LOC110496559 LOC106570512 coding upstream 1491694 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 1515183 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 1845379 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 1854682 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 1860304 57073462 ~ 57109628 (-)
G1563630 NA non-coding downstream 127923 55061266 ~ 55064066 (-)
G1563377 NA non-coding downstream 248267 54943145 ~ 54943722 (-)
G1563372 NA non-coding downstream 254483 54937059 ~ 54937506 (-)
G1563370 NA non-coding downstream 256523 54935256 ~ 54935466 (-)
G1563369 NA non-coding downstream 257072 54934690 ~ 54934917 (-)
G1563761 NA non-coding upstream 75035 55288193 ~ 55289118 (-)
G1563777 NA non-coding upstream 101647 55314805 ~ 55315301 (-)
G1563779 NA non-coding upstream 104642 55317800 ~ 55318086 (-)
G1563969 NA non-coding upstream 204555 55417713 ~ 55420680 (-)
G1563971 NA non-coding upstream 211821 55424979 ~ 55433774 (-)
G1563253 NA other downstream 526346 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 1297040 53887137 ~ 53895002 (-)
G1562828 NA other downstream 1316397 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 1439306 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 1268310 56481468 ~ 56488289 (-)
G1566899 NA other upstream 2814353 58027511 ~ 58027790 (-)
G1566923 NA other upstream 2862465 58074209 ~ 58078146 (-)
G1566972 NA other upstream 2954226 58167384 ~ 58167697 (-)

Expression


Co-expression Network