G1563969


Basic Information

Item Value
gene id G1563969
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55417713 ~ 55420680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1789371
AAATGATACTGTTCTCTACGTGGTACTCTGCTGCAGTTTCCAGTGTCTAAATTATCCTGTTCTCTACGTAGTACTCTGATGCTGTATCCAGTGTCAAAATGATCCTGTTATCTACATAGTAGTCTGGTGCAGTCTCCAGTGACTAAAGGATCCTGTTCTCTACGTAGTACTCTGCCACTGTATCCAGTGACGAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCAGTCTCCAGTGTCTAAATGATCCTGTTCTCTACGTAGTACTCTACTGCTGTATCCAGTGACTAAATGAACCTGTTCTCTACCTAGTACTCTGCTGCCGTATCCAGTGACTAAatgatcctgttctctacctAGTACTCTGCTGCAGTCTCCAGTGTCTAAATGATCCTGTTCTCTACATAGTAACTCACTGCTGTATCCAGTGACTAAATTATCCTGTTCTCTACATAGGACCTCACTGCTGTATCCAGTGACTAAATGATCATGTTCTCTACGTAGTACCTCACTGCTGTATCCAGTGACTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGTCTAAATGATCCTGTTCTCTACATAGTACTCTGCTGCTGTATCCAGTGTCTAAatgatcctgttctctacctAGTACTCTGCTGCTGTATCCATTGACAAAATGATCCAGTTCTCTACCTCGTACTCTGCTGCCGTATCCAGTGACTAAATTATACTGTTCTCTACGTGGTACTCTGCTGCAGTCTCCAGTGACTAAATTATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGTCTAAATTATCCTGTTCTCTACctagCACTCTACTGCTGTATCCAGTGACTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGTCTAAatgatcctgttctctacctAGTACTCTGCTGCTGTATCCAGTGTCTAAattatcctgttctctacctagTACTCTGCTGCTGTATCCAGTGTCTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGACTAAATTATCCTCTTCTCTACGTAGTTCTCTGCTGCTGTATCCTGTGTCTAAATGATCCTGTTCTCTACATAGTACTCTGCTGCTGTATCCAGTGTCTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGACTAAATGATCCTGCTCTCTACCTAGTACTCTGCTGCAGTCTCCAGTGTCAAAATGATCCTGTTATCCACGTAGTACTCTGCTGCAGTCTCCAGTGTCTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGACTCAATTATCTTGTTCTCTACGTAGTACTCTGCTACTGTATCCAGTGACTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCAGTCTCCAGTTTCTAAATTATCCTGTTCTCTACCCACTAGTATGCTGCTGTATCCAGTGACTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGACTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGACTAAATTATCCTGTTCTCTACGTAGTTCTCTGCTGCTGTATCCTGTGTCTAATTATTCTGTTCTCTACATAGTACCTCACTGCTGTATCCAGTGACTAAATGATCCTGTTCTTTACCTAGTACTCTGCTCCTGTATCCAGTGTCTAAATGATCCTGTTCTCTACGTAGTACCTCACTGCTGTATCCATTGACTAAATGATCCTGTTCTCTACATAGTACCTCAATGCTGTATCCAGTGACTAAATGATCCTGTTCTCTACGTAGTACTCTGCTGCTGTATCCAGTGTCTAAATGATCCTGTACTCGACCCACTACTCTATGTAGACTCAAGTGTCTAAATTAACCTGTACTCTACCTAGTACTCTGCTGCAGTCTCCAGTGTCTAAATTATCGTGTACTCTACCTAAAACTCTGCCTCAATGTCTAAATTTTTCTGTACTCTACCTAGGACTTTGCTTTAGTCTCCAGTGTCTAAAATATCCTGAATAATCTGGGGATAATAACCCTCTCCTCTGCATGTCATCGCCATGGCAACAAGAGCAGCCTGGCTAATTTTGTAGAGTATCCTTCCCttacgtgtctctctctctctctcactcacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
Flagellar attachment zone protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1789371 True 2221 lncRNA 0.43 5 55417713 55420680

Neighbor

gene id symbol gene type direction distance location
LOC118941190 LOC106588825 coding downstream 563869 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 577791 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 764781 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 865396 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 1100089 54316124 ~ 54317624 (-)
LOC110496559 LOC106570512 coding upstream 1284172 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 1307661 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 1637857 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 1647160 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 1652782 57073462 ~ 57109628 (-)
G1563779 NA non-coding downstream 99627 55317800 ~ 55318086 (-)
G1563777 NA non-coding downstream 102412 55314805 ~ 55315301 (-)
G1563761 NA non-coding downstream 128595 55288193 ~ 55289118 (-)
G1563704 NA non-coding downstream 180503 55164393 ~ 55237210 (-)
G1563971 NA non-coding upstream 4299 55424979 ~ 55433774 (-)
G1564030 NA non-coding upstream 108872 55529552 ~ 55529810 (-)
G1564062 NA non-coding upstream 135558 55556238 ~ 55556548 (-)
G1564243 NA non-coding upstream 172090 55592770 ~ 55675593 (-)
G1564265 NA non-coding upstream 206196 55626876 ~ 55628909 (-)
G1563253 NA other downstream 752070 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 1522764 53887137 ~ 53895002 (-)
G1562828 NA other downstream 1542121 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 1665030 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 1060788 56481468 ~ 56488289 (-)
G1566899 NA other upstream 2606831 58027511 ~ 58027790 (-)
G1566923 NA other upstream 2654943 58074209 ~ 58078146 (-)
G1566972 NA other upstream 2746704 58167384 ~ 58167697 (-)

Expression


Co-expression Network