G1564243


Basic Information

Item Value
gene id G1564243
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 55592770 ~ 55675593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1789665
gttttactgtggatatagatacgttgtaccagtttcctccagcatattcacaaggtcctttgctgttgttctgggattgatttgcacttttcgcaccaaagtatgttcatctctaggagacagaaggcgtctcctttcagagcgatatgacggctgcatggtccaatTGTGTTTATTCTTGCTtactattgtctgtacagattaacgtggtaccttcaggcatttgaaaattgctcctaaggaagaaccagacttgtgcaggtctacaatttttttctgaggtcttgactgatttcttttgattttcccgagatgtcaagcaaagaggcagtgagttggagggtaggccttgacatacatccacaggaacaccaccaattgattcaaatgattagtcaatcagaagcttctaaagccatgacatcattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccacttgaattgtgattCAATgaatttaagtgaaataatctgtcagtaaacaattgttggagaaattacttttgtcatacacaaagtagatgtcataaccgactttccaaaactatagtttattaacaagacatttgtggggtggttgaaaaacaagtttttagtgtatgcaaacttttgacttcaactgtttgTATGGAGCGTAATGTTTTTACAgttttattcacgttttcaaTTAAAGGTGACAAATAATGCATTCAGATTATTACATATGTTGTAATGGACacctatgatgtgtgtaaaatacttttttgaaggttgtactgatgaTAATGAGCTAAGCAATTTGCCAGCTATGTGAggtgccatgtttgttgacaatATACAATGCATTTTGGGTGTCACGtaatctgtcagaccaaagatgttttGATGAGGTGAAGGAATAGTTCACTCATCTTTCGGGGAAACTTCCAGAAGTGAATTGAAAGGGAAGTGGATGATCGTAGGCAACACATCCCCTTCAACATggggctgcagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaatccccgagctgacaaggtacaaatctgttgttctgcccctgaacaggcagttaaccccactgttcctagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1789665 True 1152 lncRNA 0.39 2 55592770 55675593

Neighbor

gene id symbol gene type direction distance location
LOC118941190 LOC106588825 coding downstream 738926 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 752848 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 939838 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 1040453 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 1275146 54316124 ~ 54317624 (-)
LOC110496559 LOC106570512 coding upstream 1029259 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 1052748 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 1382944 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 1392247 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 1397869 57073462 ~ 57109628 (-)
G1564062 NA non-coding downstream 36222 55556238 ~ 55556548 (-)
G1564030 NA non-coding downstream 62960 55529552 ~ 55529810 (-)
G1563971 NA non-coding downstream 158996 55424979 ~ 55433774 (-)
G1563969 NA non-coding downstream 172090 55417713 ~ 55420680 (-)
G1563779 NA non-coding downstream 274684 55317800 ~ 55318086 (-)
G1564334 NA non-coding upstream 49074 55724667 ~ 55727412 (-)
G1564506 NA non-coding upstream 197241 55872834 ~ 55874357 (-)
G1564507 NA non-coding upstream 199010 55874603 ~ 55877818 (-)
G1564508 NA non-coding upstream 199874 55875467 ~ 55877180 (-)
G1564517 NA non-coding upstream 221290 55896883 ~ 55897407 (-)
G1563253 NA other downstream 927127 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 1697821 53887137 ~ 53895002 (-)
G1562828 NA other downstream 1717178 53874410 ~ 53875592 (-)
G1562816 LOC100136012 other downstream 1840087 53752406 ~ 53752683 (-)
G1565122 LOC106613431 other upstream 805875 56481468 ~ 56488289 (-)
G1566899 NA other upstream 2351918 58027511 ~ 58027790 (-)
G1566923 NA other upstream 2400030 58074209 ~ 58078146 (-)
G1566972 NA other upstream 2491791 58167384 ~ 58167697 (-)

Expression


Co-expression Network