Gene
RNA
| Item | Value |
|---|---|
| gene id | G1564471 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 55909557 ~ 55910106 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrotransposable element Tf2 protein type 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1789924 | True | 550 | lncRNA | 0.50 | 1 | 55909557 | 55910106 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496554 | LOC106588828 | coding | upstream | 696390 | 55173706 ~ 55213167 (+) |
| LOC110496553 | LOC106588826 | coding | upstream | 738163 | 55051875 ~ 55171394 (+) |
| tppc3 | tppc3 | coding | upstream | 1050479 | 54853906 ~ 54859078 (+) |
| armh2 | cssa27h6orf229 | coding | upstream | 1081938 | 54823660 ~ 54827619 (+) |
| LOC110496551 | fam65b | coding | upstream | 1092198 | 54738253 ~ 54817359 (+) |
| LOC110496862 | LOC106588838 | coding | downstream | 118764 | 56028870 ~ 56504444 (+) |
| LOC110496558 | LOC106588839 | coding | downstream | 659254 | 56569360 ~ 56704104 (+) |
| LOC110496561 | LOC106588843 | coding | downstream | 911428 | 56821534 ~ 56833489 (+) |
| LOC110496562 | LOC106588845 | coding | downstream | 935067 | 56845173 ~ 56849827 (+) |
| LOC110496564 | LOC106588844 | coding | downstream | 951391 | 56861497 ~ 56876018 (+) |
| G1564470 | NA | non-coding | upstream | 909 | 55908085 ~ 55908934 (+) |
| G1564468 | NA | non-coding | upstream | 2761 | 55906567 ~ 55906796 (+) |
| G1564456 | NA | non-coding | upstream | 10992 | 55876155 ~ 55898565 (+) |
| G1564455 | NA | non-coding | upstream | 24570 | 55872725 ~ 55884987 (+) |
| G1564457 | NA | non-coding | upstream | 27030 | 55881831 ~ 55882527 (+) |
| G1564492 | NA | non-coding | downstream | 38637 | 55948743 ~ 55950874 (+) |
| G1564643 | NA | non-coding | downstream | 146300 | 56056406 ~ 56146707 (+) |
| G1564711 | NA | non-coding | downstream | 262898 | 56173004 ~ 56173206 (+) |
| G1564720 | NA | non-coding | downstream | 274155 | 56184261 ~ 56184491 (+) |
| G1564726 | NA | non-coding | downstream | 279602 | 56189708 ~ 56190328 (+) |
| G1563547 | NA | other | upstream | 770326 | 55138648 ~ 55139231 (+) |
| LOC110496545 | LOC106588816 | other | upstream | 1398811 | 54412770 ~ 54510923 (+) |
| G1561856 | NA | other | upstream | 2032627 | 53872173 ~ 53876930 (+) |
| G1561845 | NA | other | upstream | 2068686 | 53817164 ~ 53840871 (+) |
| G1564638 | LOC106607612 | other | downstream | 140482 | 56050588 ~ 56051793 (+) |
| G1565672 | NA | other | downstream | 1121515 | 57031621 ~ 57031963 (+) |
| LOC110496571 | hoxa7aa | other | downstream | 1199022 | 57109128 ~ 57112335 (+) |
| LOC110496591 | LOC106588881 | other | downstream | 1941115 | 57851179 ~ 57870361 (+) |
