XLOC_003480 (mbd1b)


Basic Information

Item Value
gene id XLOC_003480
gene name mbd1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25560072 ~ 25576199 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006824
ACGGGTTTCCGGGTTACAGCAGCACTTCCGGCTTCTCTTCAGtgtcagttatttaaaatttaccAATGTGTGGCTCGTTAAGGTGTTAACAGttcAAATAGGAAAAATAAGGTGGCTATACAACCATGGACACAGAGGAAGTAGCAGCTGAAGCACCTGCAGAAACAGCAACCGAGGAAAAAGATGCAACTTCAGAGGAAAACAAAGAGTCCACGACAAGCACAGACATCCAGGATCATGTCACGGACAAAAACCAAGAGGAAGATGCAGCTGCAAAGGAAGACGAAGAAGCTGTTATTGACAAGGAAGCTGAAGAAGCTGTAATTCAGAAAAAAGATGAAGAAGCAGTAGTTCAGAAGGAAGGTGAAGAAGCTATAATTCAGAAGGAAGGTGAAGAAACTATAGCCGAGAAAGAAGGTGAAGAAACTGTAACCGAGAAAGAAGGTGAAGATGCTGTAACAGAGAAAGAAGGTGAAGAAGCTGAAACCGAAAAAGAAGGTGAAGATGCTGTAACCGAAAAAGAAGGTGAAGATGCTGTAACCGAAAAAGAAGGTAAAGATGCAGTAACCGAGAAAGAAGGTGAAGAAGCTGAAACTGAGAATAAAGGTGAAGAAGCTGAAACGGAGAATAAAGGTGAAGAAGCAGTACTCGAGAAGCAAGATGAATCTTCTAAAGATGTTGACAATCCTTCTTGTGACTGGTTGGAGCCACTTGAAGAAGATTGTGAAGATGTTGATTCTCAGAGCGTCGATGGAGAAGTTGAGAGCGTTGCGGGGAGCGAGTTTAGTGGGAGTGTAGTTCTGAAAAGCACTGGAGACAGAGGTGGAAGAGGTGCTGGGAGAGCTAGAAGGAAAACACAGTTCGAGGCTGATGAAGGCTGGGAAGATTGGCCGGCATTGGGTAAAGGATGGAAACGCAAGGAGGTTTTTCGCCGATCGGGCACCAGTGAAGGACGCAGTGATACATATTATATAAGtcCAAGAGGTCGTAAAGTAAGAAGCAGAGTTGAGCTTACAAAACACATTGGCCATTCTGTGGACCTGacaaattttgattttaaatcaGGCCAGTTTCTTGGAGAAGGGGCTCGAAGAAAACCTAGAGTGAGAAGGAAAATGGAATCTCCTCTAGCACAACCTGAAACCTCCCTTACACTCAGTGTTCGAAGCGATTCGGCAGATGTCCAGCGACCAGCGTCTTCAGCAGGTTTCGCTACTGCTCAAAAAAAGAGCTTGCATTCAACTCAGAATCCTCCATATGCCACCACTGCATCGAACCTCAGTACCTTTGTGAGTCCTGGGACAAATAAGTCTTCATTAAGTGCCACTACTCAGCCTGTTGTTGATCTGACAGAAGATGCTGCAAATCCAACTCCTCCTGTAGTGTCTGTAGCCTCAGAGAAACCTGTCAATGGTGCCAGTGGAGGTCCTAGACGTTTGTTTGGAGTCTGCATTAGATGTAATAAAACCTATTCTTATGAAGAAGGACAAACTTTGTGCAAGGACTGCAGGATAGAGAATAGAGCATTGGCAAGCAGAAAACCATACAAAAAGTGGGTTCCATGTGGTCGATGCTGGGCTTGTCAAACAACAGTGGACTGTGGGAAATGCGTTAGCTGCAGAAATGGCCGGCTGCGCCATCGACTTAATATCCACTCTCGTAAAGTTGTTAAATGTCGCAAACGGAAATGTTTACACCCTGTTCGTAGGGAGAGGGGTTTTAAGGATTCAGAGGGGCAGTTTTCAAACATGGAATCTTCAATGAGCACAGAACCCTCAGTCTCAGAAGATTATGACGAATCACAGAGCTCTTATTTGCAGTACAGTGACTCAGAGGATTTGTCTGTGTTCTTTGAGGGTAATGATGGTGACAATGGCCTGGATGAGATGGGTGTACCAAAGGTGCGTCGCCGTTCATGTGGAAAGTGTAAAGGCTGTGTTCGTCGTACAGACTGTGGAACCTGTGACTTTTGCATGGACAAACCCAAGTTTGGaggcagaaataaaaaaagacagaaatgCCGTCTACGACAATGCACGCGAGAGGCAATGAAGCATTTGTTGCCAATGGATGAGGCAGAGCTGCTTGCTCAGGGCTGGTTGCCCCGCCGCAGGCCGCGGTACACATATGGACGAGGTACACCCGGGTCCAAGAAGATGTGGGGTTTTGAGATGTCAGATGATATGCCTGAACAGTACATGCAGAAAAATTCAGCTCACCTGATGAATCAAGACCGATTCCTGCACCCCAGTTACAATGGAAAGGCCTACAGTTATACTGATGTGCCAAACAGTCATATGGTGAACAACATGCCACTCTATAATCCACACAAAGTTGAGGAGACGATGAGTCCTCATGTGCGAACTGGACAGGCGGAGATGATCAAAGAAAATGGGCTTCAGAGCATCAGTAACAGAAGCTTTGTGGCTAGGAGACCTGACGTTCCTCCTACCACTCAGTTTGACAGCACTGGAAATCCAGGCTCTAAAACTGAAAGAAACCGATCGCAGGATGAACAATCAGAGGGCGAGTCTTTCCCATCGATCACTCAGATATTCAGCGTGGCAGGCAGCGACCACGCCGTCCAGGGCATGGACGTAAATCACGAACTGATGCCGCTCTTGAGATCTCTACGCAGTATAGTCCTCCCAGTTCTCTGGTTCTGCGTGGTGGTGGAAGGGCCGCGGTTACAGCTGCTGCAGTGCTCCAAACGCTCCACCATGGCGGATACCGTCATCTACATCGAGCCCGGCTTTCACTACCACATCAGCGTCCAGGACCAGCCGCTGCTGCCCACACACAAACTCTACGACTGCCACCCGTCTCGCCTCACCAGCGCGGCTGAGATCATCGCCCTCATCGAGGATCTGGAGAAGCACTCCGTCTGCCAAGGCTCAGAGCACAAACACAGCTCAGACCTGGTGATTCCCGAACGGGCGGCTACTTGTGACTTCCTTATTTCAGCAGAGGTAGAACGCTGTGAGAAATGCCAGACTTTACAAAGGGcgtagagagaaagagaaagctgGAAATTGCTCTTatgtgatacatttttttaatttctgactTTGTATTCCAGCTCATTTGTGTGATTGAAATATTTTCTTACTCTAATATAAAATTATTGGAGTGTTTTGTTTGTCCTCAGATGAATTCATTGACTTGCGACTCAATTTTTGGTTGCTTTACTTGACAAACTTCCTATATTAATAAGCGACCACTaagcaaaacataatttttttaacccTTGAGTATGTGATGCATCATGGTACTACACATTGCACATCATTGAGGTAGTTAACGGGCCTGTTTGACCATTGAGCAGTTTAACTGTACATCATGCCTCGCACTAAACACTAAAGTGCTTCATATCCATTTTGGTTGAATTCCCTGCACCAATGATTCATGTTTAATGTTTATGTACTTCTCAGGGGGGATTTTTCAGAATGCATTAATCAGATGGAAGATCCATGTTTGTTTCATATTTGCTGTATGATGCGCGGTGGGGCTGAAACATGATTTTGTACATAATTCAAGCGGTGGCAGAGAATTAGGATCCAATATAGCCCGAATGTTTTTATAAACGTGTTGTTTTTTCCAAAATTTCAGTTTCCTCTGTTACAAAACACTTTAAATCGTTTGTATGTGATTTCATATGGATATTctcaattttgtttatttaataaatcatattatcTGTTG
>TCONS_00006825
ACTTCCGGCTTCTCTTCAGtgtcagttatttaaaatttaccAATGTGTGGCTCGTTAAGGTGTTAACAGCAACAATAGGCCTTTGAATGCAGATGCGGGTGCCTGTATCGAATGTATAACACACAGCAAAAAGAGTATGCAGATAACTTGACGTTAATAAGATttcAAATAGGAAAAATAAGGTGGCTATACAACCATGGACACAGAGGAAGTAGCAGCTGAAGCACCTGCAGAAACAGCAACCGAGGAAAAAGATGCAACTTCAGAGGAAAACAAAGAGTCCACGACAAGCACAGACATCCAGGATCATGTCACGGACAAAAACCAAGAGGAAGATGCAGCTGCAAAGGAAGACGAAGAAGCTGTTATTGACAAGGAAGCTGAAGAAGCTGT
>TCONS_00006826
ATGGACACAGAGGAAGTAGCAGCTGAAGCACCTGCAGAAACAGCAACCGAGGAAAAAGATGCAACTTCAGAGGAAAACAAAGAGTCCACGACAAGCACAGACATCCAGGATCATGTCACGGACAAAAACCAAGAGGAAGATGCAGCTGCAAAGGAAGACGAAGAAGCTGTTATTGACAAGGAAGCTGAAGAAGCTGTAATTCAGAAAAAAGATGAAGAAGCAGTAGTTCAGAAGGAAGGTGAAGAAGCTATAATTCAGAAGGAAGGTGAAGAAACTATAGCCGAGAAAGAAGGTGAAGAAACTGTAACCGAGAAAGAAGGTGAAGATGCTGTAACAGAGAAAGAAGGTGAAGAAGCTGAAACCGAAAAAGAAGGTGAAGATGCTGTAACCGAAAAAGAAGGTGAAGATGCTGTAACCGAAAAAGAAGGTAAAGATGCAGTAACCGAGAAAGAAGGTGAAGAAGCTGAAACTGAGAATAAAGGTGAAGAAGCTGAAACGGAGAATAAAGGTGAAGAAGCAGTACTCGAGAAGCAAGATGAATCTTCTAAAGATGTTGACAATCCTTCTTGTGACTGGTTGGAGCCACTTGAAGAAGATTGTGAAGATGTTGATTCTCAGAGCGTCGATGGAGAAGTTGAGAGCGTTGCGGGGAGCGAGTTTAGTGGGAGTGTAGTTCTGAAAAGCACTGGAGACAGAGGTGGAAGAGGTGCTGGGAGAGCTAGAAGGAAAACACAGTTCGAGGCTGATGAAGGCTGGGAAGATTGGCCGGCATTGGGTAAAGGATGGAAACGCAAGGAGGTTTTTCGCCGATCGGGCACCAGTGAAGGACGCAGTGATACATATTATATAAGtcCAAGAGGTCGTAAAGTAAGAAGCAGAGTTGAGCTTACAAAACACATTGGCCATTCTGTGGACCTGacaaattttgattttaaatcaGGCCAGTTTCTTGGAGAAGGGGCTCGAAGAAAACCTAGAGTGAGAAGGAAAATGGAATCTCCTCTAGCACAACCTGAAACCTCCCTTACACTCAGTGTTCGAAGCGATTCGGCAGATGTCCAGCGACCAGCGTCTTCAGCAGGTTTCGCTACTGCTCAAAAAAAGAGCTTGCATTCAACTCAGAATCCTCCATATGCCACCACTGCATCGAACCTCAGTACCTTTGTGAGTCCTGGGACAAATAAGTCTTCATTAAGTGCCACTACTCAGCCTGTTGTTGATCTGACAGAAGATGCTGCAAATCCAACTCCTCCTGTAGTGTCTGTAGCCTCAGAGAAACCTGTCAATGGTGCCAGTGGAGGTCCTAGACGTTTGTTTGGAGTCTGCATTAGATGTAATAAAACCTATTCTTATGAAGAAGGACAAACTTTGTGCAAGGACTGCAGGATAGAGAATAGAGCATTGGCAAGCAGAAAACCATACAAAAAGTGGGTTCCATGTGGTCGATGCTGGGCTTGTCAAACAACAGTGGACTGTGGGAAATGCGTTAGCTGCAGAAATGGCCGGCTGCGCCATCGACTTAATATCCACTCTCGTAAAGTTGTTAAATGTCGCAAACGGAAATGTTTACACCCTGTTCGTAGGGAGAGGGGTTTTAAGGATTCAGAGGGGCAGTTTTCAAACATGGAATCTTCAATGAGCACAGAACCCTCAGTCTCAGAAGATTATGACGAATCACAGAGCTCTTATTTGCAGTACAGTGACTCAGAGGATTTGTCTGTGTTCTTTGAGGGTAATGATGGTGACAATGGCCTGGATGAGATGGGTGTACCAAAGGTGCGTCGCCGTTCATGTGGAAAGTGTAAAGGCTGTGTTCGTCGTACAGACTGTGGAACCTGTGACTTTTGCATGGACAAACCCAAGTTTGGaggcagaaataaaaaaagacagaaatgCCGTCTACGACAATGCACGCGAGAGGCAATGAAGCATTTGTTGCCAATGGATGAGGCAGAGCTGCTTGCTCAGGGCTGGTTGCCCCGCCGCAGGCCGCGGTACACATATGGACGAGGTACACCCGGGTCCAAGAAGATGTGGGGTTTTGAGATGTCAGATGATATGCCTGAACAGTACATGCAGAAAAATTCAGCTCACCTGATGAATCAAGACCGATTCCTGCACCCCAGTTACAATGGAAAGATGAAGGCCTACAGTTATACTGATGTGCCAAACAGTCATATGGTGAACAACATGCCACTCTATAATCCACACAAAGTTGAGACGATGAGTCCTCATGTGCGAACTGGACAGGCGGAGATGATCAAAGAAAATGGGCTTCAGAGCATCAGTAACAGAAGCTTTGTGGCTAGGAGACCTGACGTTCCTCCTACCACTCAGTTTGACAGCACTGGAAATCCAGGCTCTAAAACTGAAAGAAACCGATCGCAGGATGAACAATCAGAGGGCGAGTCTTTCCCATCGATCACTCAGATATTCAGCGTGGCAGGCAGCGACCACGCCGTCCAGGGCATGGACGTAAATCACGAACTGATGCCGCTCTTGAGATCTCTACGCAGTATAGTCCTCCCAGTTCTCTGGTTCTGCGTGGTGGTGGAAGGGCCGCGGTTACAGCTGCTGCAGTGCTCCAAACGCTCCACCATGGCGGATACCGTCATCTACATCGAGCCCGGCTTTCACTACCACATCAGCGTCCAGGACCAGCCGCTGCTGCCCACACACAAACTCTACGACTGCCACCCGTCTCGCCTCACCAGCGCGGCTGAGATCATCGCCCTCATCGAGGATCTGGAGAAGCACTCCGTCTGCCAAGGCTCAGAGCACAAACACAGCTCAGACCTGGTGATTCCCGAACGGGCGGCTACTTGTGACTTCCTTATTTCAGCAGAGGTAGAACGCTGTGAGAAATGCCAGACTTTACAAAGGGcgtagagagaaagagaaagctgGAAATTGCTCTTatgtgatacatttttttaatttctgactTTGTATTCCAGCTCATTTGTGTGATTGAAATATTTTCTTACTCTAATATAAAATTATTGGAGTGTTTTGTTTGTCCTCAGATGAATTCATTGACTTGCGACTCAATTTTTGGTTGCTTTACTTGACAAACTTCCTATATTAATAAGCGACCACTaagcaaaacataatttttttaacccTTGAGTATGTGATGCATCATGGTACTACACATTGCACATCATTGAGGTAGTTAACGGGCCTGTTTGACCATTGAGCAGTTTAACTGTACATCATGCCTCGCACTAAACACTAAAGTGCTTCATATCCATTTTGGTTGAATTCCCTGCACCAATGATTCATGTTTAATGTTTATGTACTTCTCAGGGGGGATTTTTCAGAATGCATTAATCAGATGGAAGATCCATGTTTGTTTCATATTTGCTGTATGATGCGCGGTGGGGCTGAAACATGATTTTGTACATAATTCAAGCGGTGGCAGAGAATTAGGATCCAATATAGCCCGAATGTTTTTATAAACGTGTTGTTTTTTCCAAAATTTCAGTTTCCTCTGTTACAAAACACTTTAAATCGTTTGTATGTGATTTCATATGGATATTctcaattttgtttatttaataaatcatattatcTGTT

Function

symbol description
mbd1b Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human MBD1 (methyl-CpG binding domain protein 1).

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6318 Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human MBD1 (methyl-CpG binding domain protein 1).

Ensembl:

ensembl_id ENSDARG00000025699

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006824 False 3702 mRNA 0.45 17 25560072 25576199
TCONS_00006825 False 393 mRNA 0.42 3 25560095 25560828
TCONS_00006826 True 3579 mRNA 0.45 16 25560632 25576198

Neighbor

gene id symbol gene type direction distance location
XLOC_003479 cxxc1b coding upstream 9227 25539698 ~ 25550845 (+)
XLOC_003478 tfe3b coding upstream 40235 25504215 ~ 25519837 (+)
XLOC_003477 gnl3l coding upstream 57581 25485774 ~ 25502491 (+)
XLOC_003476 opn1lw2 coding upstream 76866 25481046 ~ 25483206 (+)
XLOC_003475 opn1lw1 coding upstream 80035 25477643 ~ 25480037 (+)
XLOC_003481 ccdc120 coding downstream 7751 25583950 ~ 25618583 (+)
XLOC_003482 comtb coding downstream 43693 25619892 ~ 25631442 (+)
XLOC_003483 grm6b coding downstream 57842 25634041 ~ 25679721 (+)
XLOC_003484 otud5b coding downstream 105136 25681335 ~ 25689873 (+)
XLOC_003485 mon1bb coding downstream 117196 25693395 ~ 25709311 (+)
XLOC_003369 CR854846.2 misc upstream 9436990 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12848076 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12865809 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12874473 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12880044 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 293837 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 331877 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 499974 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 978958 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1381134 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 253171 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 501748 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 612318 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 649883 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1126758 26702957 ~ 26709080 (+)

Expression


Co-expression Network