Gene
RNA
| Item | Value |
|---|---|
| gene id | G1564832 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 56360981 ~ 56361211 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1G-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1790322 | True | 231 | lncRNA | 0.61 | 1 | 56360981 | 56361211 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496554 | LOC106588828 | coding | upstream | 1147814 | 55173706 ~ 55213167 (+) |
| LOC110496553 | LOC106588826 | coding | upstream | 1189587 | 55051875 ~ 55171394 (+) |
| tppc3 | tppc3 | coding | upstream | 1501903 | 54853906 ~ 54859078 (+) |
| armh2 | cssa27h6orf229 | coding | upstream | 1533362 | 54823660 ~ 54827619 (+) |
| LOC110496551 | fam65b | coding | upstream | 1543622 | 54738253 ~ 54817359 (+) |
| LOC110496558 | LOC106588839 | coding | downstream | 208149 | 56569360 ~ 56704104 (+) |
| LOC110496561 | LOC106588843 | coding | downstream | 460323 | 56821534 ~ 56833489 (+) |
| LOC110496562 | LOC106588845 | coding | downstream | 483962 | 56845173 ~ 56849827 (+) |
| LOC110496564 | LOC106588844 | coding | downstream | 500286 | 56861497 ~ 56876018 (+) |
| LOC110496570 | NA | coding | downstream | 724470 | 57085681 ~ 57087010 (+) |
| G1564726 | NA | non-coding | upstream | 170653 | 56189708 ~ 56190328 (+) |
| G1564720 | NA | non-coding | upstream | 176490 | 56184261 ~ 56184491 (+) |
| G1564711 | NA | non-coding | upstream | 187775 | 56173004 ~ 56173206 (+) |
| G1564643 | NA | non-coding | upstream | 214274 | 56056406 ~ 56146707 (+) |
| G1564492 | NA | non-coding | upstream | 410107 | 55948743 ~ 55950874 (+) |
| G1564870 | NA | non-coding | downstream | 69309 | 56430520 ~ 56430792 (+) |
| G1564880 | NA | non-coding | downstream | 93693 | 56454904 ~ 56459925 (+) |
| G1564888 | NA | non-coding | downstream | 108440 | 56469651 ~ 56469854 (+) |
| G1564889 | NA | non-coding | downstream | 110259 | 56471470 ~ 56471691 (+) |
| LOC110496862 | LOC106588838 | non-coding | downstream | 111210 | 56028870 ~ 56504444 (+) |
| G1564638 | LOC106607612 | other | upstream | 309188 | 56050588 ~ 56051793 (+) |
| G1564470 | NA | other | upstream | 452047 | 55908085 ~ 55908934 (+) |
| G1563547 | NA | other | upstream | 1221750 | 55138648 ~ 55139231 (+) |
| LOC110496545 | LOC106588816 | other | upstream | 1850235 | 54412770 ~ 54510923 (+) |
| G1565672 | NA | other | downstream | 670410 | 57031621 ~ 57031963 (+) |
| LOC110496571 | hoxa7aa | other | downstream | 747917 | 57109128 ~ 57112335 (+) |
| LOC110496591 | LOC106588881 | other | downstream | 1490010 | 57851179 ~ 57870361 (+) |
| LOC110496592 | LOC106588883 | other | downstream | 1555404 | 57893854 ~ 57935297 (+) |
| G1566224 | tbc1d5 | other | downstream | 1579886 | 57941097 ~ 57946763 (+) |
