Gene
RNA
| Item | Value |
|---|---|
| gene id | G1565125 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 56406486 ~ 56408664 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: collagen alpha-1(XVI) chain-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1790624 | True | 203 | lncRNA | 0.53 | 2 | 56406486 | 56408664 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118941190 | LOC106588825 | coding | downstream | 1552642 | 54842434 ~ 54853844 (-) |
| LOC110496552 | gmnn | coding | downstream | 1566564 | 54827717 ~ 54839922 (-) |
| LOC110496860 | LOC106588819 | coding | downstream | 1753554 | 54636849 ~ 54652932 (-) |
| tpd52 | tpd52 | coding | downstream | 1854169 | 54525693 ~ 54552317 (-) |
| LOC118941189 | mrpl53 | coding | downstream | 2088862 | 54316124 ~ 54317624 (-) |
| LOC110496559 | LOC106570512 | coding | upstream | 296188 | 56704852 ~ 56726308 (-) |
| LOC110496560 | LOC106588840 | coding | upstream | 319677 | 56728341 ~ 56737381 (-) |
| LOC110496863 | NA | coding | upstream | 649873 | 57058537 ~ 57061029 (-) |
| LOC110496566 | hoxa2ab | coding | upstream | 659176 | 57067840 ~ 57070602 (-) |
| LOC110496565 | hoxa3ab | coding | upstream | 664798 | 57073462 ~ 57109628 (-) |
| G1565097 | NA | non-coding | downstream | 42675 | 56363502 ~ 56363811 (-) |
| G1565070 | NA | non-coding | downstream | 76603 | 56329616 ~ 56329883 (-) |
| G1564997 | NA | non-coding | downstream | 208689 | 56197598 ~ 56197797 (-) |
| G1564993 | NA | non-coding | downstream | 215283 | 56190885 ~ 56191203 (-) |
| G1564992 | NA | non-coding | downstream | 215954 | 56190320 ~ 56190532 (-) |
| G1565148 | NA | non-coding | upstream | 54271 | 56462935 ~ 56463575 (-) |
| G1565163 | NA | non-coding | upstream | 56187 | 56464851 ~ 56465162 (-) |
| G1565171 | NA | non-coding | upstream | 83993 | 56492657 ~ 56496239 (-) |
| G1565146 | NA | non-coding | upstream | 93632 | 56502296 ~ 56504360 (-) |
| G1565178 | NA | non-coding | upstream | 101562 | 56510226 ~ 56510436 (-) |
| G1563253 | NA | other | downstream | 1740843 | 54660626 ~ 54665643 (-) |
| mrpl3 | mrpl3 | other | downstream | 2511537 | 53887137 ~ 53895002 (-) |
| G1562828 | NA | other | downstream | 2530894 | 53874410 ~ 53875592 (-) |
| G1562816 | LOC100136012 | other | downstream | 2653803 | 53752406 ~ 53752683 (-) |
| G1565122 | LOC106613431 | other | upstream | 72804 | 56481468 ~ 56488289 (-) |
| G1566899 | NA | other | upstream | 1618847 | 58027511 ~ 58027790 (-) |
| G1566923 | NA | other | upstream | 1666959 | 58074209 ~ 58078146 (-) |
| G1566972 | NA | other | upstream | 1758720 | 58167384 ~ 58167697 (-) |
