G1565171


Basic Information

Item Value
gene id G1565171
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56492657 ~ 56496239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1790677
TGCCACTTCTCTTCTCTACTTACACTCGAAGAGTTCTTTTCACCTCCGGCAGACGAAATGCTCCATCGCTTTTCCCTCTGTTGCGATAAGATgggagggggagaaaaagaggaggaaggaagagagagaaagagagagagagagtgagaagaggggGGAATCACAGTCACTGACAGCTCTgccctgaaacaacaacaacactattgttcttccatctccactggCCAGCGGTGTGTTGTTCCCTTCCAATTGATATattcccccttttcctctcctttTCATACTCCTCCTCTCCCGTTCTCTTGTGGCACATTATATGAAAAGAGAAACAcccccactcacacacactgcacagtgaAACGTCAGACACACACTGCACGGTGAgacgccacagacacacactgcacaGTGAAACGTCAGACACACACTGCACGGTGAAacgccacagacacacactgcacaGTGAAACGCCACAGACACAGACTGCACAGTGAAacgccacagacacacactgcacagtgaaacgcaacagacacacactgcacagtgaaacgccacagacacacactgcacaGTGAAACGCCCCAGACACACACTGCACAGTGAAacgccacagacacacactgcacagtgaaacgccccagacacacacagcacagtgaaacgccacagacacacactgcagGAAACACACAAACAGTTGGAAATACGTAAAGGCTATAGCTATACTAATCTAATCATAAGAATGAAGAAGGTCAGGACAGTCCTGGTCActggcaatagagagagagaaacagagtggtcAAGGGGAGGAGAAGGATGAAGTTGCCCCTGGACACTTCTCTAAGGTCAGTTTTATTATTTCCTCCCTAATGGTTAAGCTTATGATTTTGGGAGGGTAAGATTATCCTAGATCTGTGCAACTTCTGCATCCCCATCCTCTCCACACTGGGctccaatctggcaaccctcCATACATCCAGACCCTCAACCTGGCGACCGAGCTGGCGAAGCGGTGGAAAGCTTGATGGTGCTGATTCTCTGTGTTTCACCTCAgaccttctcctcttctccctctttatCACTGCCCTTtgccctctccctcattctctgttcattctctatcatttgtcttctcctcttcctcttgttcTACCATCCCTCACTCTTTCTCACGGGGTATTTTCCTGAATGCCCCTGTCCTTCCCGCTCTTAATCCATactcacctatctctctctcactatctctctcttgtCCTCAGCTCTATCTCCCTATACAATCTGGTCTGTCTCTTTCTGGGATCATGCCTCTATACCCCACTGATCTAACACAAAGAaacaagtgagaaagagaggaaaacGACGTCAGGGAAACCGACagcatccccaccaccaccaccgtcaTCCAAGCAGGAAGTGACACCACAGCAACATCACCCGTCAAAGTTCACAAAGAGAAGAAAATATACAAAGGAAGCGGTCAGAGACCTCACTACAagcattacaccagtacatatgTTCAGGTGGAAAGAAGACAGGGGAATCAGTGCAGAAACAGAAACACAGTcctccacacaccacacaccacacaccacacactacacactacacaccacacaccacacaccacacaccacacactacacactacacactacacaccacacaccacacaccacatactacacaccacacactacacactacacactacacactacacactacacactacacaccacacactacacactacacactacacactagagcTTTACAATCATCTATCTATTTGTCTACAGAGAAATGTACTATGGTATGGagtggagagaacacacacacacagccagaccaGCAAACTTAGAGGGATGAAGGGGGGTGAGAAGAGTTGATTTTGGGGGTTGgaggatgtggggggggggggggggggggggggggtctgtgttgggttttattttacctttcttGTGCTGGCTGCCCTTGGTTCTGCTTGCTGCCTGGCTACAGTCAAACTAAGACAGAGAGACATGTGGCACCAAGCATGACGAAGCCCAACCCAGACAAcatacaaacaaaaacaaaccaaaaGAGCCAATGAAATAACAACGTACCATccagtaacagacagacagtcagttacAGACTCACAGGCatcaaaataaaatgtacatGAAATAAATACACACATGTATGAATTAGAAGACATTTAAATGATTAGATACGGTAAACAGAATGACCAATGGACACCAAGCGAGGCCAAGCATGCAGAGCCCGGGCCAGAGATGAGTGGGTACCAGAGGGTCAGGTAATAATACAGGAAGTAGAATTGTTCTCGGTTCTGATGAGGCAACAGTGGGCTTTGGGTCTCTAAACCAAAAAGGGCTCTGGTGGACTCTCAAGttacaatatctctctctctctatctcgccggttccctctgtctctttccctcactctctctctctctcgccggttccctctgtctctttccctctctctctctctctgtctctctccgttttGACCGTTTCCTCTCTCCATGACCTGTatcttcccactctctctctcaaatctcaTTACAAAGCCCACATGCCTGCAGGGATACAACGCATGAGCTTCCTTCTCCATTTTGAAACGTTAGATGAACCCTTTTAGAGATATCTTGCCATTACCACAACCAATCATACCATCATTATTCTGTACCAAACAATCACTGAGTACAACTAACCGTTGAGTGGAATTATAAACAAGCTTGGTATTGTAGTAATAGGGGTCTTCAAAGGGACCAGTAAACGCGGAAACAAATACAATCTATTAAGGGCTACACATTTCTGTCAAATGAGAAATCAGACACAGATTGTAGTGTGCTACAGCATGGCCACTGCAGTCCTATTCAGGGTCATGTTCTAGTCCCTCTCCATAAACAGTTCCGGCAAGCGACTTGGCCCTTTTCACCTCTCCTCTTGATTGGTCCAAGGACACTAAATTAGCTGCATTAGCATAGTGCCCCTTAGTGCGCATTGAAGCTAGCGTTAGGTTTGTTCTGTCTGggctaactgtctcctcattagGCCCCACTGATAGAGCCAGGAAGTGCTAGCATGCTAGGCTACGATACACCATGCCAACACTTGGATTTTATGGGCAATTTGATGAAAACAGATGATGAGTTTATACTGGGCGCAGAGGAATGGAAATAATTAAAAACAGGCTAATGAGAGGAATTAATTATTCTATTAATGCCTCAATTGCGCCACTGAAGGCTGAGTTTAAAGAGAAACAAATGAGTAAATGAGTGGaaaactgagagggagagagaaagaagagaaatgTCAGGCCCTAGGAACAAATAGAGGAGAGcatgagatggagaggggaagaggaagagagagagagagagagagagagaaagaaagagaaagagagaga
>TU1790678
TGCCACTTCTCTTCTCTACTTACACTCGAAGAGTTCTTTTCACCTCCGGCAGACGAAATGCTCCATCGCTTTTCCCTCTGTTGCGATAAGATgggagggggagaaaaagaggaggaaggaagagagagaaagagagagagagagtgagaagaggggGGAATCACAGTCACTGACAGCTCTgccctgaaacaacaacaacactattgttcttccatctccactggCCAGCGGTGTGTTGTTCCCTTCCAATTGATATattcccccttttcctctcctttTCATACTCCTCCTCTCCCGTTCTCTTGTGGCACATTATATGAAAAGAGAAACAcccccactcacacacactgcacagtgaAACGTCAGACACACACTGCACGGTGAgacgccacagacacacactgcacaGTGAAACGTCAGACACACACTGCACGGTGAAacgccacagacacacactgcacaGTGAAACGCCACAGACACAGACTGCACAGTGAAacgccacagacacacactgcacagtgaaacgcaacagacacacactgcacagtgaaacgccacagacacacactgcacaGTGAAACGCCCCAGACACACACTGCACAGTGAAacgccacagacacacactgcacagtgaaacgccccagacacacacagcacagtgaaacgccacagacacacactgcagGAAACACACAAACAGTTGGAAATACGTAAAGGCTATAGCTATACTAATCTAATCATAAGAATGAAGAAGGTCAGGACAGTCCTGGTCActggcaatagagagagagaaacagagtggtcAAGGGGAGGAGAAGGATGAAGTTGCCCCTGGACACTTCTCTAAGGTCAGTTTTATTATTTCCTCCCTAATGGTTAAGCTTATGATTTTGGGAGGGTAAGATTATCCTAGATCTGTGCAACTTCTGCATCCCCATCCTCTCCACACTGGGctccaatctggcaaccctcCATACATCCAGACCCTCAACCTGGCGACCGAGCTGGCGAAGCGGTGGAAAGCTTGATGGTGCTGATTCTCTGTGTTTCACCTCAgaccttctcctcttctccctctttatCACTGCCCTTtgccctctccctcattctctgttcattctctatcatttgtcttctcctcttcctcttgttcTACCATCCCTCACTCTTTCTCACGGGGTATTTTCCTGAATGCCCCTGTCCTTCCCGCTCTTAATCCATactcacctatctctctctcactatctctctcttgtCCTCAGCTCTATCTCCCTATACAATCTGGTCTGTCTCTTTCTGGGATCATGCCTCTATACCCCACTGATCTAACACAAAGAaacaagtgagaaagagaggaaaacGACGTCAGGGAAACCGACagcatccccaccaccaccaccgtcaTCCAAGCAGGAAGTGACACCACAGCAACATCACCCGTCAAAGTTCACAAAGAGAAGAAAATATACAAAGGAAGCGGTCAGAGACCTCACTACAagcattacaccagtacatatgTTCAGGTGGAAAGAAGACAGGGGAATCAGTGCAGAAACAGAAACACAGTcctccacacactacacaccacacactacacactacacaccacacaccacacactacacactacacactacacaccacacaccacacaccacatactacacaccacacactacacactacacactacacactacacactacacactacacaccacacactacacactacacactacacactagagcTTTACAATCATCTATCTATTTGTCTACAGAGAAATGTACTATGGTATGGagtggagagaacacacacacacagccagaccaGCAAACTTAGAGGGATGAAGGGGGGTGAGAAGAGTTGATTTTGGGGGTTGgaggatgtggggggggggggggggggggggggggtctgtgttgggttttattttacctttcttGTGCTGGCTGCCCTTGGTTCTGCTTGCTGCCTGGCTACAGTCAAACTAAGACAGAGAGACATGTGGCACCAAGCATGACGAAGCCCAACCCAGACAAcatacaaacaaaaacaaaccaaaaGAGCCAATGAAATAACAACGTACCATccagtaacagacagacagtcagttacAGACTCACAGGCatcaaaataaaatgtacatGAAATAAATACACACATGTATGAATTAGAAGACATTTAAATGATTAGATACGGTAAACAGAATGACCAATGGACACCAAGCGAGGCCAAGCATGCAGAGCCCGGGCCAGAGATGAGTGGGTACCAGAGGGTCAGGTAATAATACAGGAAGTAGAATTGTTCTCGGTTCTGATGAGGCAACAGTGGGCTTTGGGTCTCTAAACCAAAAAGGGCTCTGGTGGACTCTCAAGttacaatatctctctctctctatctcgccggttccctctgtctctttccctcactctctctctctctcgccggttccctctgtctctttccctctctctctctctctgtctctctccgttttGACCGTTTCCTCTCTCCATGACCTGTatcttcccactctctctctcaaatctcaTTACAAAGCCCACATGCCTGCAGGGATACAACGCATGAGCTTCCTTCTCCATTTTGAAACGTTAGATGAACCCTTTTAGAGATATCTTGCCATTACCACAACCAATCATACCATCATTATTCTGTACCAAACAATCACTGAGTACAACTAACCGTTGAGTGGAATTATAAACAAGCTTGGTATTGTAGTAATAGGGGTCTTCAAAGGGACCAGTAAACGCGGAAACAAATACAATCTATTAAGGGCTACACATTTCTGTCAAATGAGAAATCAGACACAGATTGTAGTGTGCTACAGCATGGCCACTGCAGTCCTATTCAGGGTCATGTTCTAGTCCCTCTCCATAAACAGTTCCGGCAAGCGACTTGGCCCTTTTCACCTCTCCTCTTGATTGGTCCAAGGACACTAAATTAGCTGCATTAGCATAGTGCCCCTTAGTGCGCATTGAAGCTAGCGTTAGGTTTGTTCTGTCTGggctaactgtctcctcattagGCCCCACTGATAGAGCCAGGAAGTGCTAGCATGCTAGGCTACGATACACCATGCCAACACTTGGATTTTATGGGCAATTTGATGAAAACAGATGATGAGTTTATACTGGGCGCAGAGGAATGGAAATAATTAAAAACAGGCTAATGAGAGGAATTAATTATTCTATTAATGCCTCAATTGCGCCACTGAAGGCTGAGTTTAAAGAGAAACAAATGAGTAAATGAGTGGaaaactgagagggagagagaaagaagagaaatgTCAGGCCCTAGGAACAAATAGAGGAGAGcatgagatggagaggggaagaggaagagagagagagagagagagagagaaagaaagagaaagagagaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1790677 False 3429 lncRNA 0.47 2 56492657 56496239
TU1790678 True 3408 lncRNA 0.47 2 56492657 56496239

Neighbor

gene id symbol gene type direction distance location
LOC118941190 LOC106588825 coding downstream 1638813 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 1652735 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 1839725 54636849 ~ 54652932 (-)
tpd52 tpd52 coding downstream 1940340 54525693 ~ 54552317 (-)
LOC118941189 mrpl53 coding downstream 2175033 54316124 ~ 54317624 (-)
LOC110496559 LOC106570512 coding upstream 208613 56704852 ~ 56726308 (-)
LOC110496560 LOC106588840 coding upstream 232102 56728341 ~ 56737381 (-)
LOC110496863 NA coding upstream 562298 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 571601 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 577223 57073462 ~ 57109628 (-)
G1565163 NA non-coding downstream 27495 56464851 ~ 56465162 (-)
G1565148 NA non-coding downstream 29082 56462935 ~ 56463575 (-)
G1565125 NA non-coding downstream 83993 56406486 ~ 56408664 (-)
G1565097 NA non-coding downstream 128846 56363502 ~ 56363811 (-)
G1565070 NA non-coding downstream 162774 56329616 ~ 56329883 (-)
G1565146 NA non-coding upstream 6057 56502296 ~ 56504360 (-)
G1565178 NA non-coding upstream 13987 56510226 ~ 56510436 (-)
G1565322 NA non-coding upstream 66976 56563215 ~ 56563496 (-)
G1565323 NA non-coding upstream 70857 56567096 ~ 56567331 (-)
G1565401 NA non-coding upstream 200583 56696822 ~ 56697137 (-)
G1565122 LOC106613431 other downstream 4368 56481468 ~ 56488289 (-)
G1563253 NA other downstream 1827014 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 2597708 53887137 ~ 53895002 (-)
G1562828 NA other downstream 2617065 53874410 ~ 53875592 (-)
G1566899 NA other upstream 1531272 58027511 ~ 58027790 (-)
G1566923 NA other upstream 1579384 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1671145 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1914260 58410499 ~ 58411129 (-)

Expression


Co-expression Network