G1565206


Basic Information

Item Value
gene id G1565206
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56725947 ~ 56765416 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1790721
CACTTGGGCCAGAGCCAGGCACAGAGTCTGCAGGGCGACCCAGCTCTTCAACACAGCCGAGAGTCCAGTcatgatccctctctcctctccctctctctctcctcagcactAAATCCTCTCTTCTCTTGCTTTCTCCCGCTCTCCCCTGTCTTCTCCTTCAAGCCGGGACAGAAACGTTAGGGAATCCAAAGGGGGATGGGGGCTATGTGCACAGCCCCGAAGATTCCACCCAGTAAAAGTGGTGTAGAGGAAtggttggatggagggagagatggaatgagagagaggggagagagaga

Function

NR:

description
collagen alpha-2(IX) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1790721 True 299 lncRNA 0.56 2 56725947 56765416

Neighbor

gene id symbol gene type direction distance location
LOC110496558 LOC106588839 coding upstream 21843 56569360 ~ 56704104 (+)
LOC110496862 LOC106588838 coding upstream 224356 56028870 ~ 56504444 (+)
LOC110496554 LOC106588828 coding upstream 1512780 55173706 ~ 55213167 (+)
LOC110496553 LOC106588826 coding upstream 1554553 55051875 ~ 55171394 (+)
tppc3 tppc3 coding upstream 1866869 54853906 ~ 54859078 (+)
LOC110496561 LOC106588843 coding downstream 56118 56821534 ~ 56833489 (+)
LOC110496562 LOC106588845 coding downstream 79757 56845173 ~ 56849827 (+)
LOC110496564 LOC106588844 coding downstream 96081 56861497 ~ 56876018 (+)
LOC110496570 NA coding downstream 320265 57085681 ~ 57087010 (+)
LOC110496572 NA coding downstream 323136 57088552 ~ 57099306 (+)
G1565273 NA non-coding upstream 28813 56696860 ~ 56697134 (+)
G1564900 NA non-coding upstream 217460 56508284 ~ 56508487 (+)
G1564896 NA non-coding upstream 220630 56505108 ~ 56505317 (+)
G1565476 NA non-coding downstream 42455 56807871 ~ 56808352 (+)
G1565483 NA non-coding downstream 51111 56816527 ~ 56816809 (+)
G1565523 NA non-coding downstream 123231 56888647 ~ 56888928 (+)
G1565524 NA non-coding downstream 123663 56889079 ~ 56889329 (+)
G1565529 NA non-coding downstream 134748 56900164 ~ 56900477 (+)
G1564638 LOC106607612 other upstream 674154 56050588 ~ 56051793 (+)
G1564470 NA other upstream 817013 55908085 ~ 55908934 (+)
G1563547 NA other upstream 1586716 55138648 ~ 55139231 (+)
LOC110496545 LOC106588816 other upstream 2215201 54412770 ~ 54510923 (+)
G1565672 NA other downstream 266205 57031621 ~ 57031963 (+)
LOC110496571 hoxa7aa other downstream 343712 57109128 ~ 57112335 (+)
LOC110496591 LOC106588881 other downstream 1085805 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 1151199 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 1175681 57941097 ~ 57946763 (+)

Expression


Co-expression Network