G1565536 (LOC106588845)


Basic Information

Item Value
gene id G1565536
gene name LOC106588845
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 56845274 ~ 56849179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1791075
TGAAGCATATAAACCTTTATTGAACAGCTTTTTGAAAAAATATTTACAAAGTGAATATACAGCAAAAGACATACTGTTCAAGGGATTCAAGTACGCAACATGGGGAGATGAAAAAAAGAAACTAGCTGAATGTGAGGGAGAAGATGTCAAACTACATGGATTATACAAGATGTACATTTCCAACAGTAACTACATATCAGTTGAGGAACCAGTCCCTACCAGTACTGGATGAGGAATAGGTTCATTAAAAAGCGACAAATCACCCATCCATTTCTCCTCCCCGGTCTTATTCCCAGTAAATATCATCCTATCACTAAAAACGTGTACAAAAGCACAGACTTTCACCTGACTGCTCTGCACTGATACTATGGCTAAACATGCTGTAAATGACAACAAAAAAGTGGAGACATGAACAGTCCTGAGAGGCAGGAACAGGGACGGGGCCGAAGGTCTGGGGGGGCCACAAGGGACGTCGGTTGGTTGAGGAAGGGGTGCTATTGGGCCTCGTCCTCGGGACAGGAGTGCCAGGTCAGCCTCTCCTCGTAGAAGGAGATGACCACCTGAGGGCAGCGGGTGTTGGCCTCGCGGGCCGGGACCAGGTCCGCCTCATCGGAGTCTTTCCATTTCATCAAGAACATAAgttctccactgctgtctgtaGCACCGATTATCCTCTCTGGATCCAGGCTCCTGGCAAAGCCCCGCGGCTTGTCACTCACATCCTTCTTCTTCTTGGCTTTGTTTCCCTCCGTCTCTGGCTCATCTGTTGAAGACTTCCTCTTGTTGGAGTCAGGATTCTCCACCACGGTCTTCTGTGCTTCCAAGAAAGCTGAGATCAGCTCTGGACAATCCAGGTTATCCTCTGGCTCCCAAGTGTTATCCGCTGTAAATCCCTTCCACTTGAGGAAGAATTCCACCTTCCCGTTGACAATGCGCTGGTCCATCACCTTCTCCACAACATACTCCTCTGGCGGCTCTGCCTCCAATACCTCCTTCTTCCCTTTGCCATTCTGCTTTTTACCCATGTTAGGCTGCAAATCAATAAAAAGCTGATGTAGAATGAACGACGGAAAGCGAGCAAGCAACTTCGTTCTCTTCTCACCCGCGT
>TU1791076
TGAAGCATATAAACCTTTATTGAACAGCTTTTTGAAAAAATATTTACAAAGTGAATATACAGCAAAAGACATACTGTTCAAGGGATTCAAGTACGCAACATGGGGAGATGAAAAAAAGAAACTAGCTGAATGTGAGGGAGAAGATGTCAAACTACATGGATTATACAAGATGTACATTTCCAACAGTAACTACATATCAGTTGAGGAACCAGTCCCTACCAGTACTGGATGAGGAATAGGTTCATTAAAAAGCGACAAATCACCCATCCATTTCTCCTCCCCGGTCTTATTCCCAGTAAATATCATCCTATCACTAAAAACGTGTACAAAAGCACAGACTTTCACCTGACTGCTCTGCACTGATACTATGGCTAAACATGCTGTAAATGACAACAAAAAAGTGGAGACATGAACAGTCCTGAGAGGCAGGAACAGGGACGGGGCCGAAGGTCTGGGGGGGCCACAAGGGACGTCGGTTGGTTGAGGAAGGGGTGCTATTGGGCCTCGTCCTCGGGACAGGAGTGCCAGGTCAGCCTCTCCTCGTAGAAGGAGATGACCACCTGAGGGCAGCGGGTGTTGGCCTCGCGGGCCGGGACCAGGTCCGCCTCATCGGAGTCTTTCCATTTCATCAAGAACATAAgttctccactgctgtctgtaGCACCGATTATCCTCTCTGGATCCAGGCTCCTGGCAAAGCCCCGCGGCTTGTCACTCACATCCTTCTTCTTCTTGGCTTTGTTTCCCTCCGTCTCTGGCTCATCTGTTGAAGACTTCCTCTTGTTGGAGTCAGGATTCTCCACCACGGTCTTCTGTGCTTCCAAGAAAGCTGAGATCAGCTCTGGACAATCCAGGTTATCCTCTGGCTCCCAAGTGTTATCCGCTGTAAATCCCTTCCACTTGAGGAAGAATTCCACCTTCCCGTTGACAATGCGCTGGTCCATCACCTTCTCCACAACATACTCCTCTGGCGGCTCTGCCTCCAATACCTCCTTCTTCCCTTTGCCATTCTGCTTTTTACCCATGTTAGGCTGCGAAACAAGAGGGGAGGAGGTTTTCATCTTTTTAAAGAGACGAATTTGGGTTTTAATAACATGACAATGCTTACA

Function

NR:

description
PREDICTED: chromobox protein homolog 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1791075 False 1108 lncRNA 0.48 5 56845274 56849179
TU1791076 True 1109 lncRNA 0.47 4 56847409 56849179

Neighbor

gene id symbol gene type direction distance location
LOC110496560 LOC106588840 coding downstream 107893 56728341 ~ 56737381 (-)
LOC110496559 LOC106570512 coding downstream 118966 56704852 ~ 56726308 (-)
LOC118941190 LOC106588825 coding downstream 1991430 54842434 ~ 54853844 (-)
LOC110496552 gmnn coding downstream 2005352 54827717 ~ 54839922 (-)
LOC110496860 LOC106588819 coding downstream 2192342 54636849 ~ 54652932 (-)
LOC110496863 NA coding upstream 209358 57058537 ~ 57061029 (-)
LOC110496566 hoxa2ab coding upstream 218661 57067840 ~ 57070602 (-)
LOC110496565 hoxa3ab coding upstream 224283 57073462 ~ 57109628 (-)
LOC110496568 hoxa4aa coding upstream 241608 57090787 ~ 57094267 (-)
LOC110496567 hoxa5aa coding upstream 253047 57102226 ~ 57105455 (-)
G1565461 NA non-coding downstream 65115 56779954 ~ 56780159 (-)
G1565404 NA non-coding downstream 141165 56701428 ~ 56704109 (-)
G1565401 NA non-coding downstream 148137 56696822 ~ 56697137 (-)
G1565323 NA non-coding downstream 277943 56567096 ~ 56567331 (-)
G1565322 NA non-coding downstream 281778 56563215 ~ 56563496 (-)
G1565574 NA non-coding upstream 47020 56896199 ~ 56896418 (-)
G1565575 NA non-coding upstream 48364 56897543 ~ 56897751 (-)
G1565638 NA non-coding upstream 148259 56997438 ~ 56997665 (-)
G1565645 NA non-coding upstream 152790 57001969 ~ 57002191 (-)
G1565647 NA non-coding upstream 153225 57002404 ~ 57002628 (-)
G1565122 LOC106613431 other downstream 356985 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2179631 54660626 ~ 54665643 (-)
mrpl3 mrpl3 other downstream 2950325 53887137 ~ 53895002 (-)
G1566899 NA other upstream 1178332 58027511 ~ 58027790 (-)
G1566923 NA other upstream 1226444 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1318205 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1561320 58410499 ~ 58411129 (-)
G1567875 NA other upstream 2020184 58869363 ~ 58870007 (-)

Expression


Co-expression Network