G1565728


Basic Information

Item Value
gene id G1565728
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57067935 ~ 57068942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1791277
TGTGCAACTTTTCACATACCCATATTATTGCATCTTAAGAAATAATTGTGTTATTGTAATTGCAGGCCACAATGGTATATTTTTCCAGACTCTTACCTTGAATTAATCGACTAGGCCTAATCAATTAATCAATAAAAAGGAAATGTGCCGATCATATCAAACAACCACCAAAATTTACTTCATAGTTAATACCGgagtttttttctttctttaaatGTTCCAGGTGAAAGTCTCGCTCTatttttcattgatttcaatAGCTCAGATGCTGTAAGTCAATTGTAGTTAATGACTCCGAGAAAAAGTAGAAGTTGTCGGTAGATATGTCCAGATTGTCCACGGGGCTGTCCAGGGATTCTGACACACTAGGCGAGGTGGCATCAGAGAAGTGAAGGCAAGAATCCGAGGAGAATACTTGGAAGTCTTGTATTGAGACGTCCAGGGCCGCGGGACTACCGCCATTGTCCTGGCCAGGTGCAGAGCCGGGCCCTATTGTTGACACGCAGCCTGGAACAGTGGGTGACGGGTTGGGGAAATGCTTCAGATTTTTGTCATTGCTGCTCAGTGGTAAAACTGTGTAACTCTGGGCCACGCCATTGTGCGGGCCAACATTCTGGAGCTGCTGGGAAGTACTGAGTGAGTTCTGCTGAAAGGAGCAGGCCCCTCTCTCCATAAGGGCCCCGGTCACTATATTGAGGCTCTGCTCAAACACCGagccctcatcctcctcctcgtcgCTCTGGGTCCTGTCCTCAGCACTCGGCTCTTTCCCTTCGCCATTGTGGTTCTCCTTGCATTGGGTCTGCCTCTTGTGCTTCATGCGCCGGTTCTGGAACCATACTTTGACCTGCCGCTCGGTGAGGTCCAGCAGGGCGGCTATCTCCACCCTCCTCGGTCGGCAAAGATACTTGTTGAAGTGGAActccttctccagctccaggAGCTGTGTGTTGGTGTACGCAGTCCTCAACCGCCGGGaaccctctcctccactctctagAATCTCCG

Function

NR:

description
homeobox protein Hox-A2a-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1791277 True 1008 lncRNA 0.49 1 57067935 57068942
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110496564 LOC106588844 coding upstream 191917 56861497 ~ 56876018 (+)
LOC110496562 LOC106588845 coding upstream 218108 56845173 ~ 56849827 (+)
LOC110496561 LOC106588843 coding upstream 234446 56821534 ~ 56833489 (+)
LOC110496558 LOC106588839 coding upstream 363831 56569360 ~ 56704104 (+)
LOC110496862 LOC106588838 coding upstream 566344 56028870 ~ 56504444 (+)
LOC110496570 NA coding downstream 16739 57085681 ~ 57087010 (+)
LOC110496572 NA coding downstream 19610 57088552 ~ 57099306 (+)
LOC110496571 hoxa7aa coding downstream 40412 57109128 ~ 57112335 (+)
LOC110496577 NA coding downstream 68546 57137204 ~ 57140625 (+)
LOC110496950 LOC106588852 coding downstream 94183 57163125 ~ 57167993 (+)
G1565723 NA non-coding upstream 2627 57064976 ~ 57065308 (+)
G1565692 NA non-coding upstream 23955 57043766 ~ 57043980 (+)
G1565678 NA non-coding upstream 32306 57035401 ~ 57035629 (+)
G1565646 NA non-coding upstream 65277 57002277 ~ 57002658 (+)
G1565639 NA non-coding upstream 68893 56998737 ~ 56999042 (+)
G1565726 hoxa3ab non-coding downstream 9608 57078550 ~ 57079129 (+)
G1565733 NA non-coding downstream 13841 57082783 ~ 57083013 (+)
G1565736 NA non-coding downstream 16244 57085186 ~ 57085572 (+)
G1565731 NA non-coding downstream 18318 57087260 ~ 57087811 (+)
G1565672 NA other upstream 35972 57031621 ~ 57031963 (+)
G1564638 LOC106607612 other upstream 1016142 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1159001 55908085 ~ 55908934 (+)
G1563547 NA other upstream 1928704 55138648 ~ 55139231 (+)
LOC110496591 LOC106588881 other downstream 782279 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 847673 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 872155 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 1295314 58364256 ~ 58377006 (+)

Expression

G1565728 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G1565728 Expression in each Bioproject

Bar chart with 14 bars.
G1565728 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G58181 NA non-coding NC_048565.1 CM023219.2 53334741 ~ 53337311 (+)
bowfin (Amia calva) G51707 NA non-coding CM030126.1 CM030126.1 12547400 ~ 12549617 (-)