G1565803


Basic Information

Item Value
gene id G1565803
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57141117 ~ 57142923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1791378
aattattatttattaaacATGAAACTATTCCTCTTTCTGACAAATTGAAGTCAGGATCAAGAACGCCTCAGCTGAGAGCACAGTCTGCGTGCGCTTGACACGGTTCAGACGCAAACACACGTGAACGTGCACACAACCCAGGGAGAGAAATATTCAAACTGTGGCAGgcggacagagcagagcagagcagagctggaCTGGATTCCATATTTGACACACTCCCGGTGCTCACTGCATTGTTGGAGTTTTGCTGCCACCCAAAGGCAAAACTAGGAATGACAGCTTCTGCAAATAATCCATGGAGCAATTCAATTTGGAATTCCCTGTTGCGTAAAATGAATAAAATAGGTTGAGAGAGCTTCACATTACTCACTGTCTTGCTTGATTCACGCTTAGCGGCAAATGGGCAACGTGAAGTAAGAAATACATGTTCGTCTGTAAATCTTTGTTGCTGCGTTATCAAATCAACCTGATGTGTTTACAGGCTATGTCATTTCACTATACATTTTCCATTTCATATCTGCACTAAAAATAGTTGCCTTCTTCCATGGAGTACGACTTTTTTATCCGTTTTAACAGCTGTTGATGTTGAATCACAcgaaacaaaaacacaaacatacatttttgtaAGCTTTCAAACATGAATAATGAAATAGAAATCCACATGAATAGCCTATATGTAGGCCTATTGTATTAACCGAATAGTTGTCTGGTGGAGGAGCAGCCTATACTCTCACACTGAGCCTCGCTCTCCAGTTTGTCAGGCGGGGAGATGAGTAAAGGCCGGGGCTAATGGTGTGCTCTTTACTTTGACCTTCACTGTCTACCTGGGTAATGGAGACTATGGCGAGGGCTGTAATCTTCAACTGGCTATAGCCGAGAAATACCGATAGCGTTTTCCATATGCCTAGCCTGCTTGCCAGAATAGCGCATTCAGTTGTGCCTTAACCCGGTAGACAACGTGGGATACTCCGTTTTAAAAGCAGTCAACTTTAGGCTGGTAAACACCGTGGGATACCGGTGTTTTAACAACAGTTAAGCAGAGGATCTTGCCCGAGACTATGTTCATCACGCCTCTGTAGGCTGCACTCATGCCCTGGCCTATTCATTTACCAATTTGTGTAAGCGGTGGTATTTTATCCTCTGCCGATATAAATCCGTAGGTTAATTCTCAATTTCCACGAGGAAGGTCTATGGACACCAATACATGATTTTGTAGTCCTCTCCAAAATTAACCTTGTGTGCGCGCAAATGAGTCTGGCTGTGTAGTCTATTCTTTAAATTAGGTCTTACTTACACACTTTGTTAGTCATTTGTGTCTTAATTACATGATGCTATTGTTCTCCACTTCGTATTGACGGAATACAGGTAGCCTATACATCCGTTTTCTTGGGCATTTTGCTTTGTTCTCGATGGAATTCTTTGTTATTTTGAACGGCAACACAGCTCATATAAACTAAAGAATAATCTGAGCATACGTATCATTATAGACACATGTGGTTCGTTTTCGTTTCATACCAATCCCTATATAATTTCTTCCCGTATTTATTTATACTCCGAACTCTAAAACATGATATTATTTTATGGTATAGCGTTAGTTTCATATTTAGTAGTCTAGTTGAACACACTGAGTTGTATGTTAGCTAGGCTATATTCTCTGTTACTGTTCTAGCCTAAAATAATATCACGCAGAACATAGGCCTAAATCATACAcacgccatttaaaaaaaaaatgttactcAGATATAGGGTGAATTTATAATCGGAGAAAATTAGCGTATGTATGATTTAGGCTTGTTTGTAGGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1791378 True 1807 lncRNA 0.40 1 57141117 57142923

Neighbor

gene id symbol gene type direction distance location
LOC110496576 hoxa11ab coding downstream 6322 57131465 ~ 57134795 (-)
LOC110496574 hoxa10ab coding downstream 10886 57124127 ~ 57130231 (-)
LOC110496573 LOC106588846 coding downstream 18762 57117468 ~ 57122355 (-)
LOC110496569 hoxa7aa coding downstream 27008 57101716 ~ 57114109 (-)
LOC110496567 hoxa5aa coding downstream 35662 57102226 ~ 57105455 (-)
LOC110496578 hoxa13 coding upstream 3226 57146149 ~ 57148279 (-)
LOC110496951 NA coding upstream 136143 57279066 ~ 57284390 (-)
LOC110496580 LOC106588863 coding upstream 193419 57336342 ~ 57373792 (-)
LOC110496581 LOC106588859 coding upstream 277024 57418906 ~ 57427510 (-)
LOC110496865 LOC106588853 coding upstream 353716 57496639 ~ 57567805 (-)
G1565797 NA non-coding downstream 10030 57130861 ~ 57131087 (-)
G1565795 NA non-coding downstream 11414 57129477 ~ 57129703 (-)
G1565792 NA non-coding downstream 24532 57115557 ~ 57116585 (-)
G1565789 NA non-coding downstream 33747 57106845 ~ 57107370 (-)
G1565819 NA non-coding upstream 20626 57163549 ~ 57163778 (-)
G1565825 NA non-coding upstream 24859 57167782 ~ 57168087 (-)
G1565856 NA non-coding upstream 62131 57205054 ~ 57205284 (-)
G1565864 NA non-coding upstream 73122 57216045 ~ 57218817 (-)
G1565879 NA non-coding upstream 107092 57250015 ~ 57250228 (-)
LOC110496560 LOC106588840 other downstream 403770 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 652828 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2475474 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2488267 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3246168 53887137 ~ 53895002 (-)
G1566899 NA other upstream 884588 58027511 ~ 58027790 (-)
G1566923 NA other upstream 932700 58074209 ~ 58078146 (-)
G1566972 NA other upstream 1024461 58167384 ~ 58167697 (-)
G1567080 NA other upstream 1267576 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1726440 58869363 ~ 58870007 (-)

Expression


Co-expression Network