XLOC_003481 (ccdc120)


Basic Information

Item Value
gene id XLOC_003481
gene name ccdc120
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25583950 ~ 25618583 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006827
AGTTAATCAGACAAGTGGATGCGTGTTGCTCTTCCCTGTTTGCCAGTCTCCTTCCAGAGGTGTGACAGCAGCCCTTTACTCCTTATAACCAGGCTGGATGCTGAAATATGACAGAAGATGTTGTAATATGAGCGATGCAGGCAGGCTGGATGTGCTATGCATGAAGGAGAGGAAGGATGTGACTGAGGAGAGAAGAGCCGCAGATGAATATTAATTGGCATCGCAGCCTCAGCAGTAAATTGAGAAGTTGCACAGTGGCTCCCACCACAGGCCTCTGGGATACTGCAGAACGTGGCCCTTGACGCTGGATGACATGTCTCACGGGACTCAAACTACAAGGAGCTGAGGATTGATCGAAAGCTCAGTTCAGAAGACTTCCCATTTTGTTCTATGGAGGTCAAAGGTCGCGTGATCACTGCCATGGGCTTAGGATCACCTGATGTCCAAGGCTGCCAGGACAGCAAACTACAAGCAGAGCGAGTCTCAGAGCTGCAGGAGCGAAAACAGAGTCTGCAGAGTCTTCTGAACAGTCGACTTGGAGAACTGCGACAAGTCTGTCTCCTGGAGGCGGAGCTCACAGGAAAACTTCCACGGGATTTTCCTTTAGAAGAAGGAGAACGACCTCCATTTGTTCAACGCCGATCTGGATTGCCTCCTTATGTCACCTCAAAAGGAGACGATGACGCAGGTCAGCGGCGGCAGATGAAGGCTCTCTTTAGTGGTGCCCTTCGCCGGAGCATTGATTCTGATAAAAATGCACTGCACAGTAAGAGGACTGTTCATCGGGGATGCCATACAGAGGAAACTGTGAAGTCAGAGAGCAGTTCGATGTCAGACTCCACATCACATGACAACGAGGACTCATCTCCCAGTGTGGCACCTGAGCATCGCTCCCTGTCTCACCCTCGTCTGGCCCCGAGCAGTCCTGACAGTCGGCTCTGCAGAAAACTATCGCCTGTGGAGATTTACTATGAGATGAGGACTCGGCGCAACTCTGCCTCAAGCTCTGTGAGCCCAAGCCACTCACTCCCGAGAAGTGCATCTAATGTGGAGGGCAGAAGTGTTCCAGCCACACCACTGTTGTCCCGCACCGCACCTATCAGCGTCCATGTGAGGCCGGAGGTGTCTGGTGGCATTGCACTAAAGCAGTGGTGCGGAAGTCCGGATGTTCCTCAGTTTGTCCCATTGGCATCTCTGGAGGGTTCTTCGTCAGAGCGTCGCAGCTGCCCGTACAGCTCTCGAGCCCGTCGTAGCAACAGTTCAGAGGCGCTACTTGACCGCTCAAGCCTTCCTGAACCCGCACCTCCCCGAAATGGCATGCCAAACCGAGCTGGACCATACAAGAGCTCCGAGTCCCTCACTGATGGCAAGCTCCGTCAGATATACCAAGGCAGCCCAGAGAGGCAGTTGATGGGATTTAAAGACCAGGGTCGCATGCGCTCCTCTCTTGGAGGACAAAGCAGTGGCACTGGTTACAACGAGATTTTAATGGACTACATTTGGGGTAAACAGCAAAAGAGGCCTGTCCAGATTCCGCAAAGCCAGTCAGCAGGACGAATCTGGCCGGACTTCTCCACTCCTCCTTCGGGTACTCCTCCACATTATAATGGTTTCTCTCATTCGCAGTTACATCTGGCCACCGCTCCCTCTTCCTATAGCCCAATGCTGTTGCGGGGCCAAGAAGCCGAGCCCCGTCGGGTCAAAGTGACGAGAACAAAATCCTGCGGACCCTTCATCCCTTTACAGCAGCACCCACAGGATGCGGTGCTGTTCTCTGCGTATGATCCTTCATCAGCGTCCACCACCTCGTCTATTCCCAATCTGCTCCCTCACCACACTGAGCTGTCCACCGCTGCATCGTTCAGCCGCAGACCAGCTCAGTTCTCTCTGCCTACTCCCGAGGACTCGACCCGCAGTCTACACAAGGCACTGGCTCTGGAGGGCCTGCGGGACTGGTATCTGAGGAACGCCTTGGGCTACTCCACTACAGCCAAAGGCCATGATGGACTGTCCATGCGCCACTCACACACTCACCACCTGGTGCACCAGCCTCAGTCCATTGCAGCCGACCCACTGTACTCCGTACACCGTCAAATACCTCAGTCAGCTTCATTTCACGGCCATCCTTTGCATGCCAGGTCTGTGGAGCTCTCTCTGTACCCAGAGCCCTTTCCTTCAGAAGGGACCACTCAGAAAGAGTCCGGCTCTGAGCCTCCTTCACCTGGAACACTGGTCTGACCAGCAGCCAAACACACACCGGATTTGAAATGcaacatatatataataatatttgatgCAAAATTACATCTATAGGTATGCAACAGTCCGAAACTGTGCTCAAATACtagaacaaaaatatataatgcatTCTTTGTAGCATAAATGCTGCCTCacaataaaaaagaaagcaaaacaaaacagcatttaatttaaacattaaaatataccaagtggtgctcactgcagagctatttgggcagagctgagctccagtgagcttgagctctcgctcctcctttctttcacttcttctacgagtgatgtcactgggggtagggttaggggtggggttggtgcacgcattaaaacagcttatagcaggaggagcgagagctcatgctccccctcgctggagctcagctctgcacaaatggctctgcagcgagcagtgttTCAAATATACAGCTTTGAAAAAATAAGGCCTTTGAAAATTCACAATTGAATTAACAATTGACAGTTATGTTTTTGAATAAATGCTTTTGGTTTTATTCTGTGAACTTCaagtttgaaataaaaatattgtcgTTTAGAGCATATTTTTGC
>TCONS_00006828
CTGCAGTAGAACACACGGTAAACTTTTGACGTCGTACATAAAAATAACTTAAACAACAACGTGTTAATATATTCAGACATGCAGTGAATTAAGCACCTAGTTTTTCCTTTGTCGTTTTTCTGGATATCTTCTCGGCGACTTAATTTGCTCAAGCCTCAGCAGTAAATTGAGAAGTTGCACAGTGGCTCCCACCACAGGCCTCTGGGATACTGCAGAACGTGGCCCTTGACGCTGGATGACATGTCTCACGGGACTCAAACTACAAGGAGCTGAGGATTGATCGAAAGCTCAGTTCAGAAGACTTCCCATTTTGTTCTATGGAGGTCAAAGGTCGCGTGATCACTGCCATGGGCTTAGGATCACCTGATGTCCAAGGCTGCCAGGACAGCAAACTACAAGCAGAGCGAGTCTCAGAGCTGCAGGAGCGAAAACAGAGTCTGCAGAGTCTTCTGAACAGTCGACTTGGAGAACTGCGACAAGTCTGTCTCCTGGAGGCGGAGCTCACAGGAAAACTTCCACGGGATTTTCCTTTAGAAGAAGGAGAACGACCTCCATTTGTTCAACGCCGATCTGGATTGCCTCCTTATGTCACCTCAAAAGGAGACGATGACGCAGGTCAGCGGCGGCAGATGAAGGCTCTCTTTAGTGGTGCCCTTCGCCGGAGCATTGATTCTGATAAAAATGCACTGCACAGTAAGAGGACTGTTCATCGGGGATGCCATACAGAGGAAACTGTGAAGTCAGAGAGCAGTTCGATGTCAGACTCCACATCACATGACAACGAGGACTCATCTCCCAGTGTGGCACCTGAGCATCGCTCCCTGTCTCACCCTCGTCTGGCCCCGAGCAGTCCTGACAGTCGGCTCTGCAGAAAACTATCGCCTGTGGAGATTTACTATGAGATGAGGACTCGGCGCAACTCTGCCTCAAGCTCTGTGAGCCCAAGCCACTCACTCCCGAGAAGTGCATCTAATGTGGAGGGCAGAAGTGTTCCAGCCACACCACTGTTGTCCCGCACCGCACCTATCAGCGTCCATGTGAGGCCGGAGGTGTCTGGTGGCATTGCACTAAAGCAGTGGTGCGGAAGTCCGGATGTTCCTCAGTTTGTCCCATTGGCATCTCTGGAGGGTTCTTCGTCAGAGCGTCGCAGCTGCCCGTACAGCTCTCGAGCCCGTCGTAGCAACAGTTCAGAGGCGCTACTTGACCGCTCAAGCCTTCCTGAACCCGCACCTCCCCGAAATGGCATGCCAAACCGAGCTGGACCATACAAGAGCTCCGAGTCCCTCACTGATGGCAAGCTCCGTCAGATATACCAAGGCAGCCCAGAGAGGCAGTTGATGGGATTTAAAGACCAGGGTCGCATGCGCTCCTCTCTTGGAGGACAAAGCAGTGGCACTGGTTACAACGAGATTTTAATGGACTACATTTGGGGTAAACAGCAAAAGAGGCCTGTCCAGATTCCGCAAAGCCAGTCAGCAGGACGAATCTGGCCGGACTTCTCCACTCCTCCTTCGGGTACTCCTCCACATTATAATGGTTTCTCTCATTCGCAGTTACATCTGGCCACCGCTCCCTCTTCCTATAGCCCAATGCTGTTGCGGGGCCAAGAAGCCGAGCCCCGTCGGGTCAAAGTGACGAGAACAAAATCCTGCGGACCCTTCATCCCTTTACAGCAGCACCCACAGGATGCGGTGCTGTTCTCTGCGTATGATCCTTCATCAGCGTCCACCACCTCGTCTATTCCCAATCTGCTCCCTCACCACACTGAGCTGTCCACCGCTGCATCGTTCAGCCGCAGACCAGCTCAGTTCTCTCTGCCTACTCCCGAGGACTCGACCCGCAGTCTACACAAGGCACTGGCTCTGGAGGGCCTGCGGGACTGGTATCTGAGGAACGCCTTGGGCTACTCCACTACAGCCAAAGGCCATGATGGACTGTCCATGCGCCACTCACACACTCACCACCTGGTGCACCAGCCTCAGTCCATTGCAGCCGACCCACTGTACTCCGTACACCGTCAAATACCTCAGTCAGCTTCATTTCACGGCCATCCTTTGCATGCCAGGTCTGTGGAGCTCTCTCTGTACCCAGAGCCCTTTCCTTCAGAAGGGACCACTCAGAAAGAGTCCGGCTCTGAGCCTCCTTCACCTGGAACACTGGTCTGACCAGCAGCCAAACACACACCGGATTTGAAATGcaacatatatataataatatttgatgCAAAATTACATCTATAGGTATGCAACAGTCCGAAACTGTGCTCAAATACtagaacaaaaatatataatgcatTCTTTGTAGCATAAATGCTGCCTCacaataaaaaagaaagcaaaacaaaacagcatttaatttaaacattaaaatataccaagtggtgctcactgcagagctatttgggcagagctgagctccagtgagcttgagctctcgctcctcctttctttcacttcttctacgagtgatgtcactgggggtagggttaggggtggggttggtgcacgcattaaaacagcttatagcaggaggagcgagagctcatgctccccctcgctggagctcagctctgcacaaatggctctgcagcgagcagtgttTCAAATATACAGCTTTGAAAAAATAAGGCCTTTGAAAATTCACAATTGAATTAACAATTGACAGTTATGTTTTTGAATAAATGCTTTTGGTTTTATTCTGTGAACTTCaagtttgaaataaaaatattgtcgTTTAGAGCATATTTTTGCAAAATATGGcatgttcgttcattcattcattagttgattttcttttcggcttagtccctttattattccaccacagcagaatgaaccaccaacttatccagcatatgttttacgcagtagatgcccttctagttgcaacccatcacgggGAAACATggcattttaagacattttaatatacattttttacataacAAAATTCTAATGGTTTAGCTTCAAAAGagctaataaattaatatttgtaaacaACCAGGATTGTCAATCCAACGACTGAAAGCATTTTTATTCTGACCAATCGTCATTTGAACTTgttctgaaaaaaatgtatttcaaatgttatcagaccttaacagaataaaacaaatttacaattgaCTAAACTCATACCAAATGAGTCCAGAGAAACTGAAAAGTGGagtctttattttttccccaaagcTTTATACAATTGTAtaaattgtcattatttaaaaGTTAATGTATTGTACTACACATAACTCTGAAGTTGGTGCATCCCTACATTGATCATTAAACAACAGAAATAATAAGCAGTGTGTTGGCTGTCAGATTTAGCGCTGCGTTTGATTGTAAACTGGTGTTTACAAAGAGATTTTTATTTCCCTCATACTCTGTGTGTATTAATGGGATGTTATTGTAATGTATCTtcattttcaaaacagaatataaaCTGAATCATCTCCTCTTCATCCTgagatatacatataaatatattttcagagAAAAAATCTAGATTATAAGATGTATGTATTCTGAATTACTATTTTGTAACTAATGTTTCAGGTTAATCCTCATTTAATTATATACAAGTCTACTCAGAGTTTAATGAACTCATGCATTTTAATGTACTATAACAGCAGTGAATGTGTTGCATACCTGTTTGTTTAAATCTATATATCTAAATATCTATATGTAGCTATGAAGAGTATGATAAAAGCATTTCCATATAGAGGGACCCTGAGgtgaggaaggagggcttttGTCTGATTTCTGAAActaattttaaaactttaatgcAGTGATTTAGCCCTCAGTCAATGAATTTACAAAATCAAAAGGACTGATGATGTAAAATTAATGTGACTGTGAACTGAGAATGCAAACGAAATCATTAAACAACGTAAACATGCATgaggttttaaaataaatcaatccaTCTCTATTAAAGCCTTAATACAGagtcaaaaatatatttattatttagttgcttttgttattttttaacataaataactttaaaacattaaattggcATCAGACTCTGTGTATAGCTTTGGAGCTAATATTGGTATcaactattttatattttgacaTCTGAATTAATAAGCCCTTTAATAAATATAAGAAATTAGACCAATTTTAACTAACTTGTAGTTTACGTGTTGAGAAGTGGCATAAGCTGGTCTTATGTCAGCACTATTTGGGAACAAGATACCTTGTATTTGTCTTAACCAGTCAGCATGTTCTTATTTACAGTaagttcttaaagggatagtttaaatTAAAGTTTCAGACATATTTTACCCAATCTCATGTTAATCTTGAGTACCAATAAAGTATTACTGCATCCATATTTTGACcaaaaatcattgttttttttatagtaataaaCAAAAGATATGGATTCCCTCTCGAAAACCAATGGTGTGAAAGCGCAGTACAGCTTTTGCTTAACAATCTACTACCTGTGAAATTCAACCAAAAGCACAGTTATTTGAAACCTACATGCTCTTTGTTTACAATTTGTGCAGCACTAAGTGCGTGAAAGGGCTGTTTTCAAAGTCTTTATAAGAAATAATGTAGAACAAGCTACCTAGCTTTGGAAAAAACAGTATCATTGAAATGAATAGGTTTCATAGTGCGCCGCTTTCCGTGTCCTGTGTGAAAGCCGCTTTATGTTGACTGAGTGAAGTGTGTTGATGGCCGTGATCTCGCTCTCACTGTAGTAGACTCTACCATTGGAATTGACTATATAAGAAGTTCCATCCTTAATTACGTCAGCTAGAgccatgtttatataaacactggCAGTACAATTTTTGACAAAGAAAACACTTAGTTGTGTGCTAATAGTGTTTTAGCATTTGGTTTATGATTTGCATGAGAATCCATCTCTTTCACACTGTAAATTACTGAATAACACCGTAAATAATACCGAAATTACAGTTTATTTACTCACTCAATACACATGTCATAGGTATGTAGATAATTTTAATCTTCAGTATTTCGTCaatatctgactttttttgctgatttttagctgttgacttgcattttatgaatcatcaaGGATCTTTAAAGGGATCCTCCCACAATAAAGATTAAATCACAATTTCTTCACCTTGAAATAGCTCCAaggctttatgagtttctttttttcagttgaacgcaaaagtagatattttgaaaaatgttaaaatgggAGCTATATTTTTCCCCCCCTTAAATTTATGTAATGGCGGCACACATCTTTACCAGACTCAGGCAAGATTCCGCCTTTGCTTTTACTTCGCCCTAGAGCCCCAACTGGCTcactttggcccaaggtattcggcggctAAAAACTGGCACTGGCTCGCTCATTTTAAGCGTGAAAGTGGAAATGCGAATTTTTTACGACcagttttacagtatttaaaaaaactaaaacttgcgtgtttaaaaaaagaaagaaatacgaACGGTTGAATAAAAATAGGTACATCTACATTGCGCAACCTAAATTAACAgtatgttttctttgttttcctcagaactatccctttaacaatttACTATTTCTTTTTTGTACTATTTTCttcctaaaacaaacaaaaatatgaattcTGTCAAATTCCTTTTAATTTCTGGTGTGTTGTACAGTTGTTTCTGATGATCAGTACAATATGGTGTATACACTGTATGAAATACAAGACTGTAGGTTGATTTTTGCCCTTGTAAAACCTATGAACTGCAAAATCTGCAGAACATGGGACATGGTATGATGTTTACGTTGTGAACAATGATGGTCCAATTAATACTTGGTTCATTCAACTTAAAGAATTTGTGTGTAGTTCCTACTCTTCATCTTCGGGTTTGTGAGCTGGTATCTGAAACTCATGACCAAACAGCTGTGCATTGCTAGTCTCTTTAAGTGTATTTTGGTGACATAAATGTCTGTACttgtaattaattataaataacgAGAAACACCTATATGTAGCAacttgaataaatatatattgtatatttatgaaCTGATCAGATtttgtatacatatttatttgCATAGTACATGCCTCTGGTTTGTTTACACCAGCAGATCTCGTTATGAATGACACCATGTTCTGGCTTTATATTCTATCATCGCTGCTTTTAGAATCATTAATACAttgctgatttattttaaaatatacctttttcatcgttttttttttttatttttcatatcaaCCAtggtctgagaaaaaaaaaatcataataaagatCATGAAACAAAGTC

Function

symbol description
ccdc120 Involved in microtubule anchoring at centrosome and protein localization. Located in centriole. Part of centriolar subdistal appendage.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0120103 centriolar subdistal appendage cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061027-93 Predicted to be located in cytoplasm. Predicted to be part of centriolar subdistal appendage. Orthologous to human CCDC120 (coiled-coil domain containing 120).

Ensembl:

ensembl_id ENSDARG00000032856

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006827 False 2823 mRNA 0.51 11 25583950 25615084
TCONS_00006828 True 6249 mRNA 0.40 11 25596038 25618583

Neighbor

gene id symbol gene type direction distance location
XLOC_003480 mbd1b coding upstream 7751 25560072 ~ 25576199 (+)
XLOC_003479 cxxc1b coding upstream 33105 25539698 ~ 25550845 (+)
XLOC_003478 tfe3b coding upstream 64113 25504215 ~ 25519837 (+)
XLOC_003477 gnl3l coding upstream 81459 25485774 ~ 25502491 (+)
XLOC_003476 opn1lw2 coding upstream 100744 25481046 ~ 25483206 (+)
XLOC_003482 comtb coding downstream 1309 25619892 ~ 25631442 (+)
XLOC_003483 grm6b coding downstream 15458 25634041 ~ 25679721 (+)
XLOC_003484 otud5b coding downstream 62752 25681335 ~ 25689873 (+)
XLOC_003485 mon1bb coding downstream 74812 25693395 ~ 25709311 (+)
XLOC_003486 si:dkey-183j2.10 coding downstream 116895 25735478 ~ 25750060 (+)
XLOC_003369 CR854846.2 misc upstream 9460868 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12871954 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12889687 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12898351 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12903922 12679732 ~ 12680028 (+)
XLOC_003467 NA non-coding upstream 317715 25256812 ~ 25266235 (+)
XLOC_003466 NA non-coding upstream 355755 25181857 ~ 25228195 (+)
XLOC_003463 NA non-coding upstream 523852 25059462 ~ 25060098 (+)
XLOC_003447 BX072564.1 non-coding upstream 1002836 24580579 ~ 24581114 (+)
XLOC_003444 AL831791.1 non-coding upstream 1405012 24178823 ~ 24178938 (+)
XLOC_003487 NA non-coding downstream 210787 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 459364 26077947 ~ 26078061 (+)
XLOC_003489 NA non-coding downstream 569934 26188517 ~ 26196145 (+)
XLOC_003490 NA non-coding downstream 607499 26226082 ~ 26234069 (+)
XLOC_003497 NA non-coding downstream 1084374 26702957 ~ 26709080 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_03196205_03203310 CCDC120 coding CI01000306 null 3196205 ~ 3204162 (+)