G1565938


Basic Information

Item Value
gene id G1565938
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57439717 ~ 57441240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1791525
gaactaattcatatttacaatggcggcctacaccgaccaaacccggacgacgcttgggccaattgtgcaccaccatatgggactcccaatcacagctggttgcgatacagcctggattcaaaccagggtgtctgtagtgatgcctctagcacagatgcaatgccttagacggGAGCCCCAGAGAAGTCAGATTTTAAAAGTCCTAAAAACACATTTTAGTCATGacttagtgtaacagtataactttaaaccATCCCCTCGCCCGGGCTCGAACCacggaccctctgcacacatcaacaacagtcacccacgaagcatcgttacccatcgctccacaaaagccgcggcccttgcagagcaaggggaactactacttcaaggtctcagagcaagtgacgtcaccgattgaaacgctatttagtgcgcaccaccgctaactaagctagccatttcacatccgttacactagtgCACAAAATACCCATTCAATTATTCAAATAATTGACGCTgaggacaaaaaaataaaataatgtatcaCTCACAACGAAGATATTAACATTTTATATTCATCCAAAAATGTCATGTTTTTGGATGACGTCGCCGCTGGTTGCGCTGCTCCCTGTGCGCAACCGCCCAAGACCTGTTTCTAATagtaatacatgtattttatattgCGCTTTTCATTAAAGAGAATCTCAAAGACcctgtaaaaacaaacaaaacaaatgtagAGATCTGTCAGGTCTTGGGCGATGGTCTTCCACAGATTCAGATGATAACGTCATGTTCAGACAGGCAGTTCAGAAAGGCTGGGCAGTAGTTTACGAGGAGGGAGCTTCGATGGCACAGAGAGGGAGCAGTGTCAGTCAATTACTTAGACAAGCCCAGAGATCTTCATCAGGCACCTCGTCtgttgtctcctcctcctctgtaggtAGGCTGGATAGTCCACTACTGAAgtgtagcacccacctgggtgatgctTGGCAGCTATAAGCGCCAGAAAGATCACCACACATAGGCAGTAGTCAGGAAACAGTTCCCAATGAGGTGGGCCCTCTCAAGTTTAAAAtgtttaatgtcacatgcacaagtccACATCGTTGATGCAATAAAAAAATCAGCTTATGCTGTATTGATGCGTCATTCAAATGATTGAATAACCAGCTACCTAACCACCTAGCCAAGACGAAAACAAAAATGTCGTGCCATTAGTCCAGCAACTCCATTGGACAAAACCACCCAATATTAAGAAAATTCAAGAAGTCACAAAAACAAATAATTGCTTAAAAATGCAATCaaaataattaaaacaaaatatttacaaatgtaCAGGAGCCCTCTGCATAGTCTTCCTCACCACGCCACTGCAACAACGGAATGCTGATCAATATACATTTATGCGAAGACTTTACGAGAACAGATTACCTTGAAAACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1791525 True 1438 lncRNA 0.44 2 57439717 57441240

Neighbor

gene id symbol gene type direction distance location
LOC110496864 LOC106588860 coding upstream 19712 57390771 ~ 57420005 (+)
tax1bp1a LOC106588861 coding upstream 103435 57292750 ~ 57336282 (+)
LOC110496950 LOC106588852 coding upstream 271724 57163125 ~ 57167993 (+)
LOC110496577 NA coding upstream 299094 57137204 ~ 57140625 (+)
LOC110496571 hoxa7aa coding upstream 327719 57109128 ~ 57112335 (+)
LOC110496582 LOC106588858 coding downstream 137 57441377 ~ 57476399 (+)
LOC118941191 LOC106588856 coding downstream 39264 57480504 ~ 57495218 (+)
LOC110496585 LOC106588871 coding downstream 187197 57628437 ~ 57632714 (+)
tra2a LOC106588872 coding downstream 201445 57642685 ~ 57648819 (+)
LOC110496587 LOC106588873 coding downstream 215825 57657065 ~ 57694865 (+)
G1565977 NA non-coding upstream 9932 57429492 ~ 57429785 (+)
G1565958 NA non-coding upstream 53015 57379653 ~ 57386702 (+)
G1565906 NA non-coding upstream 113734 57325583 ~ 57325983 (+)
G1565927 NA non-coding upstream 120770 57317522 ~ 57318947 (+)
G1565890 NA non-coding upstream 178607 57260770 ~ 57261110 (+)
G1566024 NA non-coding downstream 78798 57520038 ~ 57520867 (+)
G1566109 NA non-coding downstream 214033 57655273 ~ 57655494 (+)
G1566158 LOC106570535 non-coding downstream 327146 57768386 ~ 57769136 (+)
G1566194 NA non-coding downstream 380370 57821610 ~ 57885127 (+)
G1566217 NA non-coding downstream 405589 57846829 ~ 57849957 (+)
G1565672 NA other upstream 407754 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 1270514 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1387924 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1530783 55908085 ~ 55908934 (+)
LOC110496591 LOC106588881 other downstream 409981 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 475375 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 499857 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 923016 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1429659 58864013 ~ 58873692 (+)

Expression


Co-expression Network