G1566024



Basic Information


Item Value
gene id G1566024
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57520038 ~ 57520867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1791622
ctccatctctatccctaacTCCATCTCTATCTCtaactccatctccatctctatatTTATCTCTAACTCTTAACTCTATATCTCTAActccatctctatccctaactccatctccatctctaactccatctccatctctatatTTATCTCTAACTCTTAACTCTATATCTCTAACTCCATCTCTATCTCCAACTCCATCTCTAATTGTACATCTCTAACACCATCTCTATCTCTAACTCTATATTTATCCCTaactccatctctatctctaacTCCATCTCTAACTCTATATTTATCTCTAACTCTTAACTCTATATCTCTAACTCCATCTCTAActccatctctatccctaacCCCATCTCTAACTCCATCTCTATCACCATCTCTAACTCTATATTTATCTCTATCTCTAACTCCATCTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1791622 True 422 lncRNA 0.36 2 57520038 57520867

Neighbor


gene id symbol gene type direction distance location
LOC118941191 LOC106588856 coding upstream 24820 57480504 ~ 57495218 (+)
LOC110496582 LOC106588858 coding upstream 43639 57441377 ~ 57476399 (+)
LOC110496864 LOC106588860 coding upstream 100033 57390771 ~ 57420005 (+)
tax1bp1a LOC106588861 coding upstream 183756 57292750 ~ 57336282 (+)
LOC110496950 LOC106588852 coding upstream 352045 57163125 ~ 57167993 (+)
LOC110496585 LOC106588871 coding downstream 107570 57628437 ~ 57632714 (+)
tra2a LOC106588872 coding downstream 121818 57642685 ~ 57648819 (+)
LOC110496587 LOC106588873 coding downstream 136198 57657065 ~ 57694865 (+)
LOC110496589 galnt15 coding downstream 209077 57729944 ~ 57742687 (+)
oxnad1 oxnad1 coding downstream 223382 57744249 ~ 57760416 (+)
G1565938 NA non-coding upstream 78798 57439717 ~ 57441240 (+)
G1565977 NA non-coding upstream 90253 57429492 ~ 57429785 (+)
G1565958 NA non-coding upstream 133336 57379653 ~ 57386702 (+)
G1565906 NA non-coding upstream 194055 57325583 ~ 57325983 (+)
G1565927 NA non-coding upstream 201091 57317522 ~ 57318947 (+)
G1566109 NA non-coding downstream 134406 57655273 ~ 57655494 (+)
G1566158 LOC106570535 non-coding downstream 247519 57768386 ~ 57769136 (+)
G1566194 NA non-coding downstream 300743 57821610 ~ 57885127 (+)
G1566217 NA non-coding downstream 325962 57846829 ~ 57849957 (+)
G1566267 NA non-coding downstream 452537 57973404 ~ 57976373 (+)
LOC110496571 hoxa7aa other upstream 408075 57109128 ~ 57112335 (+)
G1565672 NA other upstream 488075 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 1350835 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1468245 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1611104 55908085 ~ 55908934 (+)
LOC110496591 LOC106588881 other downstream 330354 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 other downstream 395748 57893854 ~ 57935297 (+)
G1566224 tbc1d5 other downstream 420230 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 843389 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1350032 58864013 ~ 58873692 (+)

Expression



Co-expression Network