G1566667 (LOC106588871)


Basic Information

Item Value
gene id G1566667
gene name LOC106588871
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57631777 ~ 57633115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1792378
AAACAGGTTGTACATTGATTGGGATAAGATTTTTTACTGGTCCGTCAGGAAAAAGTCCTGGCCCTAACCATTCGTATCTGCAAGGTGAATCAACAAGGACTAACAGTCTGGGTACTGACAAAGAGGATAGAGATGAAGTTGGAATTGATCAATTGTAACCACTTGGTAATCATCTGCTTATTGACAGTTACATTCGACTTGTTATACACCATCTAAAATcaaagtaaaaatacatttttgaagcCTTCAAGGAGAGTGCAAATAAAATTCTTTGGATTATCACTTgtatcctttaaaaaaaaagtatactgTACAACAGCTAAATAGTTttttatatcatatatatatatacacacatatatatatatatataaaacagctaaataGGACTCTTCAAATCTACATATTAACACCAGGAGCTTCTGCAAACTCAAATACATAATTTCCAAAACTACCATGAGTGCATTGTTTAGTTGAGCAACTTCTGATATGGATGAGATTTAAAGAAGCAGTACAGCAAATTCGTAGTCGGTCTGTCCAAGGGATAAAATATCGGGGTGGCTGTGCCATTCATATTCATCATCAGCTTCCTTGAAGACTCCACAGAGTACAAACATTTGTTCATTTCCTCTACTGTTGTTGATGCTTTGTTGTTGCCCATAGACATCCTCAAAGACAGCCGCAGTTTGTAGACCCTTTCATGAAAAAACAATTAGGGAATCTAAAATGTATGCCTAAGAGTCCATGACTGAGAGTATTAAAAAAGATGCTCAAATGTCTATGTAAAAAAATGTCAATCAGCCAAGTAGTTATTGGAAAGGTACAGGCAGTCAGTCCTTTCTCAGGGTTAGGTTAGTTTTAAATGATCTAGAATACATCCTCACTCTTTTCTTCCTCCCATGAGCTAATCACTGATCTGTAAATGAATGGATAAGCAAAAGGAAAGTTACCACCTGACCATCCTTATTAGATCAGTGACTACCTAAAGAAGAAAGGATGCACTTTTTACTTGAACAAGGCCTCAATCACTACCCACACTACTATACCCCTGGGCGAGGTCTGTTGGGTGTTTGTGGAGGGAGGCGAGGTGTTTCCAGGCGGTGGTTGCCTGGCGTGTCCTGCTTGTGTAAGGCAACTGGAGCTGAGGCCAGGGAGCCTGCTGCAGGATGGGAGGAGTTAGTGGCTGAAGTGTTGGCGACCAGCTCCATCTTCCCCTCCAGCTTGACCAGGCGCGTCAGGATGTCGTCCAGCAACACTGCTATGGTCCTCTTCag
>TU1792380
AAACAGGTTGTACATTGATTGGGATAAGATTTTTTACTGGTCCGTCAGGAAAAAGTCCTGGCCCTAACCATTCGTATCTGCAAGGTGAATCAACAAGGACTAACAGTCTGGGTACTGACAAAGAGGATAGAGATGAAGTTGGAATTGATCAATTGTAACCACTTGGTAATCATCTGCTTATTGACAGTTACATTCGACTTGTTATACACCATCTAAAATcaaagtaaaaatacatttttgaagcCTTCAAGGAGAGTGCAAATAAAATTCTTTGGATTATCACTTgtatcctttaaaaaaaaagtatactgTACAACAGCTAAATAGTTttttatatcatatatatatatatatacacatatatatatataaaacagctAAAAAGGGACTCTTCAAATCTACATATTAACACCAGGAGCTTCTGCAAACTCAAATACATAATTTCCAAAACTACCATGAGTGCATTGTTTAGTTGAGCAACTTCTGATATGGATGAGATTTAAAGAAGCAGTACAGCAAATTCGTAGTCGGTCTGTCCAAGGGATAAAATATCGGGGTGGCTGTGCCATTCATATTCATCATCAGCTTCCTTGAAGACTCCACAGAGTACAAACATTTGTTCATTTCCTCTACTGTTGTTGATGCTTTGTTGTTGCCCATAGACATCCTCAAAGACAGCCGCAGTTTGTAGACCCTTTCATGAAAAAACAATTAGGGAATCTAAAATGTATGCCTAAGAGTCCATGACTGAGAGTATTAAAAAAGATGCTCAAATGTCTATGTAAAAAAATGTCAATCAGCCAAGTAGTTATTGGAAAGGTACAGGCAGTCAGTCCTTTCTCAGGGTTAGGTTAGTTTTAAATGATCTAGAATACATCCTCACTCTTTTCTTCCTCCCATGAGCTAATCACTGATCTGTAAATGAATGGATAAGCAAAAGGAAAGTTACCACCTGACCATCCTTATTAGATCAGTGACTACCTAAAGAAGAAAGGATGCACTTTTTACTTGAACAAGGCCTCAATCACTACCCACACTACTATACCCCTGGGCGAGGTCTGTTGGGTGTTTGTGGAGGGAGGCGAGGTGTTTCCAGGCGGTGGTTGCCTGGCGTGTCCTGCTTGTGTAAGGCAACTGGAGCTGAGGCCAGGGAGCCTGCTGCAGGATGGGAGGAGTTAGTGGCTGAAGTGTTGGCGACCAGCTCCATCTTCCCCTCCAGCTTGACCAGGCGCGTCAGGATGTCGTCCAGCAACACTGCTATGGTCCTCTTCag
>TU1792381
AAACAGGTTGTACATTGATTGGGATAAGATTTTTTACTGGTCCGTCAGGAAAAAGTCCTGGCCCTAACCATTCGTATCTGCAAGGTGAATCAACAAGGACTAACAGTCTGGGTACTGACAAAGAGGATAGAGATGAAGTTGGAATTGATCAATTGTAACCACTTGGTAATCATCTGCTTATTGACAGTTACATTCGACTTGTTATACACCATCTAAAATcaaagtaaaaatacatttttgaagcCTTCAAGGAGAGTGCAAATAAAATTCTTTGGATTATCACTTgtatcctttaaaaaaaaagtatactgTACAACAGCTAAATAGTTttttatatcatatatatatatacacacatatatatatatataaaacagctAAAAAGGGACTCTTCAAATCTACATATTAACACCAGGAGCTTCTGCAAACTCAAATACATAATTTCCAAAACTACCATGAGTGCATTGTTTAGTTGAGCAACTTCTGATATGGATGAGATTTAAAGAAGCAGTACAGCAAATTCGTAGTCGGTCTGTCCAAGGGATAAAATATCGGGGTGGCTGTGCCATTCATATTCATCATCAGCTTCCTTGAAGACTCCACAGAGTACAAACATTTGTTCATTTCCTCTACTGTTGTTGATGCTTTGTTGTTGCCCATAGACATCCTCAAAGACAGCCGCAGTTTGTAGACCCTTTCATGAAAAAACAATTAGGGAATCTAAAATGTATGCCTAAGAGTCCATGACTGAGAGTATTAAAAAAGATGCTCAAATGTCTATGTAAAAAAATGTCAATCAGCCAAGTAGTTATTGGAAAGGTACAGGCAGTCAGTCCTTTCTCAGGGTTAGGTTAGTTTTAAATGATCTAGAATACATCCTCACTCTTTTCTTCCTCCCATGAGCTAATCACTGATCTGTAAATGAATGGATAAGCAAAAGGAAAGTTACCACCTGACCATCCTTATTAGATCAGTGACTACCTAAAGAAGAAAGGATGCACTTTTTACTTGAACAAGGCCTCAATCACTACCCACACTACTATACCCCTGGGCGAGGTCTGTTGGGTGTTTGTGGAGGGAGGCGAGGTGTTTCCAGGCGGTGGTTGCCTGGCGTGTCCTGCTTGTGTAAGGCAACTGGAGCTGAGGCCAGGGAGCCTGCTGCAGGATGGGAGGAGTTAGTGGCTGAAGTGTTGGCGACCAGCTCCATCTTCCCCTCCAGCTTGACCAGGCGCGTCAGGATGTCGTCCAGCAACACTGCTATGGTCCTCTTCag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1792378 False 1274 lncRNA 0.40 2 57631777 57633115
TU1792380 False 1273 lncRNA 0.40 2 57631777 57633115
TU1792381 True 1273 lncRNA 0.40 2 57631777 57633115

Neighbor

gene id symbol gene type direction distance location
fam221a fam221a coding downstream 3468 57599288 ~ 57628309 (-)
LOC110496583 LOC100380778 coding downstream 51314 57577413 ~ 57580463 (-)
LOC110496865 LOC106588853 coding downstream 63972 57496639 ~ 57567805 (-)
LOC110496581 LOC106588859 coding downstream 205774 57418906 ~ 57427510 (-)
LOC110496580 LOC106588863 coding downstream 257985 57336342 ~ 57373792 (-)
LOC118941192 NA coding upstream 19659 57652774 ~ 57656815 (-)
LOC110496588 LOC106588875 coding upstream 65999 57699114 ~ 57715653 (-)
rftn1a LOC106588880 coding upstream 133385 57766500 ~ 57812891 (-)
dazl dazl coding upstream 189618 57822733 ~ 57831166 (-)
LOC110496952 LOC106588868 coding upstream 205604 57838719 ~ 57848361 (-)
G1566660 ccdc126 non-coding downstream 176 57630735 ~ 57631601 (-)
G1566645 NA non-coding downstream 47371 57584083 ~ 57584406 (-)
G1566620 NA non-coding downstream 113083 57518140 ~ 57518694 (-)
G1566579 NA non-coding downstream 180245 57450926 ~ 57451532 (-)
G1566568 NA non-coding downstream 190194 57439678 ~ 57441583 (-)
G1566683 NA non-coding upstream 9624 57642739 ~ 57644028 (-)
G1566685 NA non-coding upstream 13919 57647034 ~ 57648817 (-)
G1566688 NA non-coding upstream 17958 57651073 ~ 57651788 (-)
G1566716 NA non-coding upstream 58967 57692082 ~ 57692457 (-)
G1566714 NA non-coding upstream 59796 57692911 ~ 57760375 (-)
LOC110496560 LOC106588840 other downstream 894430 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1143488 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2966134 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2978927 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3736828 53887137 ~ 53895002 (-)
G1566899 NA other upstream 394396 58027511 ~ 58027790 (-)
G1566923 NA other upstream 442508 58074209 ~ 58078146 (-)
G1566972 NA other upstream 534269 58167384 ~ 58167697 (-)
G1567080 NA other upstream 777384 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1236248 58869363 ~ 58870007 (-)

Expression


Co-expression Network