G1566685


Basic Information

Item Value
gene id G1566685
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57647034 ~ 57648817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1792401
AAGATTTGGGTTTTTATtttcattaaaataaaaaaatcatacaTCTAAATAAAAATCTCCGGAGGTATCCCGACAATAAACAAGCAACTCAAAAACGAAGACCCTTCTCAATCCActgattcatttcacatttcctccTACTAAAACCAAAAAGCCTGTTTGAATACTTTGAATATTAAATACATATTTTCTTCCCTTGAGGTAATCACTGATCTGTCAAGGCTGGATTGGTGAAAGCAATAAAATGTATACCATGCTTCCACTTATACAGTCACTTACAGATCAGTGATGGAGAAGGGTACGTTCTAAAGACACTCAAAACAGGCTCAATTAGTTTCATTACCACCCTCTAGATCTTTAGCAAACACTACATGGATGCATcgaaaagttttttaaaaattaaGACATCTACAGCACGTAAACAAACGACTGACTCTCTGTCCGAACTCTGACTTCCGTGCTAAGTCACAGAGGAGATTCTGTCTGTTGATAAACACTTCAGTTAGCGTGACAAAGCTCCCAAACGGCTCCGTTCCAATGTGGGTCACGAAGAAAAGGAAAACTTAATCTTGATGGAAGTCTGTTAGTATCGTCGTATCGGTCGTACGAGTCCcggcccctcctccctccaccactgcTGCCACTGTTTcgctctcctccaccaccaccaccaccatGTGTGGGTCGGCCCATGTAGATGCCAGGCGTAGGGGTGTGGGCCCTCTTGGTGATGGAAAAGTCCACTCTGATACGTCTCCCGTCCAGCTCCATACCGTTGGCACGCTCCATCgcctagaagaaaaaaaaagagacgAGGAACCAAATGATAGGAGTTTAAAATCAGTTACTCTGAAAATGAGCTTCTCTCCATCTCAACTCTGGGTTCTACTTGCCCAGGGATAGTTTTGGGGTGAAGGGTAAAGACACGGTTTAATGCGTGCGCATACTGAGCACGGCT

Function

NR:

description
transformer-2 protein homolog alpha isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1792401 True 958 lncRNA 0.43 3 57647034 57648817

Neighbor

gene id symbol gene type direction distance location
fam221a fam221a coding downstream 18725 57599288 ~ 57628309 (-)
LOC110496583 LOC100380778 coding downstream 66571 57577413 ~ 57580463 (-)
LOC110496865 LOC106588853 coding downstream 79229 57496639 ~ 57567805 (-)
LOC110496581 LOC106588859 coding downstream 221031 57418906 ~ 57427510 (-)
LOC110496580 LOC106588863 coding downstream 273242 57336342 ~ 57373792 (-)
LOC118941192 NA coding upstream 3957 57652774 ~ 57656815 (-)
LOC110496588 LOC106588875 coding upstream 50297 57699114 ~ 57715653 (-)
rftn1a LOC106588880 coding upstream 117683 57766500 ~ 57812891 (-)
dazl dazl coding upstream 173916 57822733 ~ 57831166 (-)
LOC110496952 LOC106588868 coding upstream 189902 57838719 ~ 57848361 (-)
G1566683 NA non-coding downstream 3006 57642739 ~ 57644028 (-)
G1566667 LOC106588871 non-coding downstream 13919 57631777 ~ 57633115 (-)
G1566660 ccdc126 non-coding downstream 15433 57630735 ~ 57631601 (-)
G1566645 NA non-coding downstream 62628 57584083 ~ 57584406 (-)
G1566620 NA non-coding downstream 128340 57518140 ~ 57518694 (-)
G1566688 NA non-coding upstream 2256 57651073 ~ 57651788 (-)
G1566716 NA non-coding upstream 43265 57692082 ~ 57692457 (-)
G1566714 NA non-coding upstream 44094 57692911 ~ 57760375 (-)
G1566748 NA non-coding upstream 85306 57734123 ~ 57734391 (-)
G1566715 NA non-coding upstream 107565 57756382 ~ 57761979 (-)
LOC110496560 LOC106588840 other downstream 909687 56728341 ~ 56737381 (-)
G1565122 LOC106613431 other downstream 1158745 56481468 ~ 56488289 (-)
G1563253 NA other downstream 2981391 54660626 ~ 54665643 (-)
LOC110496860 LOC106588819 other downstream 2994184 54636849 ~ 54652932 (-)
mrpl3 mrpl3 other downstream 3752085 53887137 ~ 53895002 (-)
G1566899 NA other upstream 378694 58027511 ~ 58027790 (-)
G1566923 NA other upstream 426806 58074209 ~ 58078146 (-)
G1566972 NA other upstream 518567 58167384 ~ 58167697 (-)
G1567080 NA other upstream 761682 58410499 ~ 58411129 (-)
G1567875 NA other upstream 1220546 58869363 ~ 58870007 (-)

Expression


Co-expression Network