G1566217


Basic Information

Item Value
gene id G1566217
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57846829 ~ 57849957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1791837
GGCTGGGTGGCTGCTGTGCAAGAATGAAGGCTACCTGACAGGCTCACTTTCCTGTTGAACTCGTCAAGATTCTTCTCGTATCCTCAGAACATAAAACAACAAGGAAAATGCcatgggcactatctgatgtgtggagacatttcactgcagctaatgaagaaggaaaagctgtgtacatttgcaaatactgtgccaaatcatatgtgaagaatgcaacaaaacagcagaatcatctggccaagtgcatgaagttccctcagtgctcacaacaagcaacctctgacaaaagtccctctacttccatttgaggtgaaaattatgaataagacaccttatcgatagcaacagctcacgATAAGCTcacctcctggaatcagaagtgttTTTGACAAAATGGAGGAacatagtcagagaaatgctgatgaatgtcttgctcaagctgtgtatgcaactggttcacctctgagctaacttattttccaccataatttgc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1791837 True 493 lncRNA 0.43 2 57846829 57849957

Neighbor

gene id symbol gene type direction distance location
oxnad1 oxnad1 coding upstream 86413 57744249 ~ 57760416 (+)
LOC110496589 galnt15 coding upstream 104142 57729944 ~ 57742687 (+)
LOC110496587 LOC106588873 coding upstream 151964 57657065 ~ 57694865 (+)
tra2a LOC106588872 coding upstream 198010 57642685 ~ 57648819 (+)
LOC110496585 LOC106588871 coding upstream 214115 57628437 ~ 57632714 (+)
LOC110496591 LOC106588881 coding downstream 1222 57851179 ~ 57870361 (+)
LOC110496592 LOC106588883 coding downstream 43897 57893854 ~ 57935297 (+)
LOC110496868 LOC106588864 coding downstream 215527 58065484 ~ 58140619 (+)
LOC110496594 LOC106588886 coding downstream 332520 58182477 ~ 58187784 (+)
LOC110496595 LOC106588888 coding downstream 338835 58188792 ~ 58212558 (+)
G1566158 LOC106570535 non-coding upstream 77693 57768386 ~ 57769136 (+)
G1566109 NA non-coding upstream 191335 57655273 ~ 57655494 (+)
G1566024 NA non-coding upstream 325962 57520038 ~ 57520867 (+)
G1565938 NA non-coding upstream 405589 57439717 ~ 57441240 (+)
G1565977 NA non-coding upstream 417044 57429492 ~ 57429785 (+)
G1566267 NA non-coding downstream 123447 57973404 ~ 57976373 (+)
G1566269 NA non-coding downstream 131642 57981599 ~ 57981812 (+)
G1566278 NA non-coding downstream 147018 57996975 ~ 57997466 (+)
G1566279 LOC106588885 non-coding downstream 148482 57998439 ~ 57999085 (+)
G1566281 NA non-coding downstream 149305 57999262 ~ 57999524 (+)
LOC110496571 hoxa7aa other upstream 734866 57109128 ~ 57112335 (+)
G1565672 NA other upstream 814866 57031621 ~ 57031963 (+)
LOC110496862 LOC106588838 other upstream 1677626 56028870 ~ 56504444 (+)
G1564638 LOC106607612 other upstream 1795036 56050588 ~ 56051793 (+)
G1564470 NA other upstream 1937895 55908085 ~ 55908934 (+)
G1566224 tbc1d5 other downstream 91140 57941097 ~ 57946763 (+)
G1566445 LOC106588893 other downstream 514299 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 1020942 58864013 ~ 58873692 (+)

Expression


Co-expression Network