G1566279 (LOC106588885)


Basic Information

Item Value
gene id G1566279
gene name LOC106588885
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 57998439 ~ 57999085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1791905
TCTTAGGCTGGGTTGGGCCTGCTCCATTATAGAAGAGCTGGTCCTGGTCCGTGTGGTGTTGGTTGTGATTCTCTCTGTGGTTGTCGTCCTGGCTCGGATGTTGGTTGTGTTGGATCTCACTGTAGTGCTGTCTATGGTTCTGGTGAGTGTAGCTGTGGTGCTGGCTGTGGAAGAAGCTGAGGATGGTGTGTTTGGGCAGGCCCAGCTGGGCTGACAGTGTGTGGACAGCCTCCTCGTCTGGGTTCAGACCAACGTCCTGGATGAAGCTCTGCAGGATCCCCTGTGCCTCTCGGGACACCCGAAACCCCTCGCCATCACTCCCACCATCGCCCTCGCCGTTAGTCTGTCTGCCCCCCGCCCAccgtccctctcccccttccttgtcATTGTTACACACACCCCTAACCCTGCCCTGGCCCCAACCCCTACTGCCCCTGCCAGTAATATCCTCTTCCCTCCCATCACCCTGACTACTTCCCCACCAGGTCCTCAGTTGCCCCCTACGCCCCTCAGTCTCGGCCGGTGATGCTGTGGATGGTTGTCGTGGCGGCAGGCGAGGCTCCGCCTGGGGCTGCAAGGGCAGCTGGGACAGAGCGGTCAGTGTTCgttgatggtgttgttgttgCAATGGGGAGTGGCGTTGGAGC

Function

NR:

description
DNA-binding protein SATB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1791905 True 647 lncRNA 0.60 1 57998439 57999085

Neighbor

gene id symbol gene type direction distance location
LOC110496592 LOC106588883 coding upstream 63142 57893854 ~ 57935297 (+)
LOC110496591 LOC106588881 coding upstream 128078 57851179 ~ 57870361 (+)
oxnad1 oxnad1 coding upstream 238023 57744249 ~ 57760416 (+)
LOC110496589 galnt15 coding upstream 255752 57729944 ~ 57742687 (+)
LOC110496587 LOC106588873 coding upstream 303574 57657065 ~ 57694865 (+)
LOC110496868 LOC106588864 coding downstream 66399 58065484 ~ 58140619 (+)
LOC110496594 LOC106588886 coding downstream 183392 58182477 ~ 58187784 (+)
LOC110496595 LOC106588888 coding downstream 189707 58188792 ~ 58212558 (+)
LOC110496954 LOC106588892 coding downstream 327045 58326130 ~ 58338076 (+)
LOC118941193 NA coding downstream 379610 58378682 ~ 58383251 (+)
G1566278 NA non-coding upstream 973 57996975 ~ 57997466 (+)
G1566269 NA non-coding upstream 16627 57981599 ~ 57981812 (+)
G1566267 NA non-coding upstream 22066 57973404 ~ 57976373 (+)
G1566194 NA non-coding upstream 113312 57821610 ~ 57885127 (+)
G1566217 NA non-coding upstream 148482 57846829 ~ 57849957 (+)
G1566281 NA non-coding downstream 177 57999262 ~ 57999524 (+)
G1566280 LOC106588885 non-coding downstream 6115 58005200 ~ 58005835 (+)
G1566282 NA non-coding downstream 6928 58006013 ~ 58006590 (+)
G1566295 NA non-coding downstream 31896 58030981 ~ 58031285 (+)
G1566296 NA non-coding downstream 32542 58031627 ~ 58031854 (+)
G1566224 tbc1d5 other upstream 51676 57941097 ~ 57946763 (+)
LOC110496571 hoxa7aa other upstream 886476 57109128 ~ 57112335 (+)
G1565672 NA other upstream 966476 57031621 ~ 57031963 (+)
G1566445 LOC106588893 other downstream 365171 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 871814 58864013 ~ 58873692 (+)
dlx5a dlx5 other downstream 958036 58957121 ~ 58959671 (+)
sem1 shfm1 other downstream 1025895 59024919 ~ 59035388 (+)
G1567716 asb4 other downstream 1310899 59309984 ~ 59312723 (+)

Expression


Co-expression Network