G1566443


Basic Information

Item Value
gene id G1566443
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58349530 ~ 58352481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1792102
TGGGAAGACAAGCAGTTTATTGTGAAGTGAGACTGCACAGTGTGAACTGATACATGATGTGGTCTCTAAAAGGACAGTTGCCACCTCTGGAAACTTAGACATTAAAACTCATGATAGGCACAGAAATAATGTATCTGAATTGGAGACAGTATAAAAAGAGCACCTAGAGCAACATTACATAAGGCAGTTATATCAAGTTATATCAGTATATCAGAACCTGTGTGATTACTGGCTTCAGTTTAGGCTTGAGCTACCTACCTAACACTTCTTTGGAAATACACAACCTTTGAAATGTCACAATGAGTCTGTTAGGCCTACACTTGCCTATTGCTGAATACTGAAGTGTTAGTGGCATGTTGCGTCTGTGAGATTTAGGCTATAAAGAAACAGCATTTAACAGACTTTGGCAGCTGAGTccgacctcctcctctccctagaGTCAGGCACtttgattttgtgtgtgttcACCTTCAGAAGGAGTAAGTGCACCACCCAAGCACTCTTCAAAGCAGCTGGTAAggggaggggagtgtgtgtgtgagacaaccACATCTCTCAAAGCAAGTAAGAAAATAGGAGTAAAATACAACAATATTTTCAGCATTATAGTAACAGTGTACACGGAAGGAAACAGATTAAGATTATAATACACAAACCATGGGACACTTTCAACCAGAGGTCGAAAAACAGCACTTATTTCTTTGAGGCATTTGATCAACCAAGACGTTTccatgttgaagcaacatctgaaaaTGACATGGTGGTGGCCATTTTACCTTCTTCAAAGAAATTACAACTCAGATATTTCAATCAATGCCTCATTTTTTCCAAGATATGCTTTTGTCAACCAGCTGATTAATAAacagaatatgttttttttaagctCCTCACTGGTTTCATCTCTGCTTTCAAATgtactgtacactcttagaattaGTGGTGACTCGAGGAACACTGGAGGTACTCAATGAACCCCTGGAGTTCCTCAATATTTGCACCTTAGGTTAGTTGAGGGGTTCTTGGAGGAACCTTTCATGTTTCAATGTAGCAAAGGGTTCCTGTCGGAACCCTGGACTGGAGGTGTGGCTTGGTAGGGGTGTGGCTTTCAGATTTCCTGTTGTATTTTCATCACATGTTAAGGTTGAACAATGACAGTTCTGTAGCTTCAATGAGGCTTACAGAGGTGTACGAGTTCCTCAAGAGCCTGTGCAAATCCCAATTTTGGACCTTATGTCATCAGCATTgttaatattattaatattatattagAATATGTAATATGCATAAATATTCAAGGAACATTGAAATTTGCATGATGAAACTTTACATAATGAAAAGGAATGACATTTACTGTAATgtgtggccaaaaataactatctgcCATACCTCCAATAAGATACACCTccaatcttctgataggctgccaTCTCTACAATATAGTATTAAAAAGGTTCAGAATTGAACCTCACTCATCACAAAAAGGTTCTGATGTGAACCTTTACACAGGGGTTCCTCGAATAATTTTTAGAATTGGTTCTTTGGTTCTAAAAGTTCTTCCAGGCTCCGTTACTTCTAAGAGTGCATACTGTCTATTAAGGGAGATTTATAAATGGTTGACCCACTAAAATTATTCTTACAGAAACGTTATGTTCAAGCAGTTGGAATCAGTCAAGAGCTGTCATGGTCATGAGACTGAAGTTGTTTtgatatcattggaagattGACAGGTTATGTGGTACTGAACATTTCCAGAGCTTGCTGAGAATCCATCCTGTACTATACACTTAGTATAGTACAGGATTGTACTAAAAAGAAAACAGTGTTTTTTGGTAAATGAGGGGAAATAAATTATTGGTCAAAAGGACAGTTCACTAAACTCAATCCCACCTACCACCAAGCCTTAGACCAGCACCCTTTCCAGTGTAAAATTCAGCTAGAAAACTTTTTTGGGAATGTGTAGAGAGATGCGTGGCTACTGCAACTGCAGATCTGCTGACAGTAATAGGAATACATAAATCAATGATATAGCTAGCATGATTAAGAGTTAGGTCCTCAGTGATAACACTAACTAAACTGTAACACAAGTGGATTGCTAGTTTCTCTCTGGTGCTTGTGTCATCTAACATTCTATCTCTCTGGTTCTCACTATCCCAATCTGTCCGTAAGGGGTTggcttccagagagagagagcgaaagagagagagagagttcagatcAAGCCAGTCCTTTCATCACCATAGCAGTGGAAATTGAGACTTCTGAACAGAAGCAGGAAGTAAACAGTCGATCCCAGGCCAAAGCCAAGGAGTCTGGGAAGTGTGGTCTTTGGGATAGTGAGTCTTGAGGTGATTATTGCTGTGTCCTGAAGCCGGGGAGGCTATATGGAGGAGCCCCTCTAAGCCTGCAGGCCGTGAGTTTGTTTTGATGCCATAAACCTTGAGTTATGTTGGGGGCGGCTGGAGTTTCAATACCTACAGTGTTGGGTAAGGGGATAAGGGTGTAAGGGGTAAGAGTAGTGGTTCTTGGGGTAGTTGGTTCCTCCAAGGGTCAGAGTGTGAACTCCGGGGTTCTGGTTGTGTTGCTCCCCCAGAGTTTAGTACGGGGCTGGTTGAGTTGCACCCCGAGGGTAGGAAGGGGAAGTGGGTACGGGGTGAAGGGAAGGGGCTCTGGGGATGCTGAGTTCCTGGAGTGCCTGTCTCTACTTGCGTCGGCgatgttggtggtgatggtggctTTGCATGTCTTCCATGGTGACCCTACCCCACACGCCGATCACGAACGCCTCGATCTCACACTCATTTTCTCCGCGAGCGATACGGAAGTAGCCGTTCTCCCCCCAGTTCTTCCCCCACGAGTTGGCAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1792102 True 2862 lncRNA 0.42 3 58349530 58352481

Neighbor

gene id symbol gene type direction distance location
LOC110496954 LOC106588892 coding upstream 11454 58326130 ~ 58338076 (+)
LOC110496595 LOC106588888 coding upstream 136972 58188792 ~ 58212558 (+)
LOC110496594 LOC106588886 coding upstream 161746 58182477 ~ 58187784 (+)
LOC110496868 LOC106588864 coding upstream 208911 58065484 ~ 58140619 (+)
LOC110496592 LOC106588883 coding upstream 414233 57893854 ~ 57935297 (+)
LOC118941193 NA coding downstream 26214 58378682 ~ 58383251 (+)
LOC118941195 NA coding downstream 30834 58383315 ~ 58384050 (+)
LOC118941196 NA coding downstream 31622 58384103 ~ 58384651 (+)
LOC118941194 NA coding downstream 32815 58379624 ~ 58386065 (+)
LOC110496610 aunip coding downstream 384868 58737349 ~ 58739567 (+)
G1566440 NA non-coding upstream 5589 58343656 ~ 58343941 (+)
G1566439 NA non-coding upstream 6822 58342440 ~ 58342708 (+)
G1566416 NA non-coding upstream 40651 58307177 ~ 58308879 (+)
G1566362 NA non-coding upstream 182327 58166996 ~ 58167203 (+)
G1566361 NA non-coding upstream 183466 58165856 ~ 58166064 (+)
G1566457 NA non-coding downstream 25736 58378217 ~ 58379396 (+)
G1567094 NA non-coding downstream 85236 58437717 ~ 58438457 (+)
G1567095 NA non-coding downstream 89421 58441902 ~ 58445013 (+)
G1566224 tbc1d5 other upstream 402767 57941097 ~ 57946763 (+)
LOC110496591 LOC106588881 other upstream 486484 57851179 ~ 57870361 (+)
LOC110496571 hoxa7aa other upstream 1237567 57109128 ~ 57112335 (+)
G1565672 NA other upstream 1317567 57031621 ~ 57031963 (+)
G1566445 LOC106588893 other downstream 11775 58364256 ~ 58377006 (+)
LOC110496618 LOC106588914 other downstream 518418 58864013 ~ 58873692 (+)
dlx5a dlx5 other downstream 604640 58957121 ~ 58959671 (+)
sem1 shfm1 other downstream 672499 59024919 ~ 59035388 (+)
G1567716 asb4 other downstream 957503 59309984 ~ 59312723 (+)

Expression


Co-expression Network