G1566445 (LOC106588893)


Basic Information

Item Value
gene id G1566445
gene name LOC106588893
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58364256 ~ 58377006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1792104
GGCCGTTATCCATAATCTCCTTCATGATCTCCTTCTCGTTTGATGAGAGCCTGTAGGGAGGTGTAGACTGGTAGATGTCATTGTGGTAGGTGTGTGTGCTGGGGCAGCGTGCAGTAGCCTGTCTCTTCCCTCTGCCCACAGAGCGACTCTGCATCATACAGCGGCCCACCTCTGCTGTCGTCTGCTGGGGAGCAGAGAACGGGTAGCACTCCTCTGTCACcacaCCTCTGCGTCTCAGGTACCACCAGGCTCCGTCGATACGTCCTCCAGCACAGCCCCCTTGGTTGCGTGTGTCACAGGAAATTAGGTTCTGGGGCGACAGCTGAGGGGTCATGTGACCCATCGACTGGATGGAGATTCGATCCGATGCCACCGCTGCAGTGGAGAAGGCCCAGGAGGCAGCGCAGTTGCCCTGGTCCAGAGGTTCATGGATCTTTCCAGGCCACTTCTCTGCTGCATTAAAATACTGAGGCAGACGGTCATTCTGAGTATCCATATTCATCTGCATCTCGTTCATGCTCATGATGGTCCTGGAGGGCCTCTGTGTCCCCAGGCGATACCTCAGGCCCTCCTCCAGAGACATGCCATAGAACTGGCTGTAGTTTCCTGCCCGCcagCCAAAGTTTCCTCTGTTGACAGCCTGGATCATATCATTCTCTATCAGACAGGCATGCTGCTCACACTCCCAACGGCCAGTTGTTCCACACGTGCTGTAGGaggtagagaaggggagggggagaagagcagagagagaggagagaggtgcagaTAAAGAGGGGGAAGATGAATGAAGAGGGCAGCACAGAGAGGGTACAAGAGTTCAAGTTAGAATGGACAGGGGTCAGAACTCAGAACACTGCTTTAGATTCATAGATAATGGTGCCACATTTTATTCATTATAATAATTGGAAGTCTACTACTGTACTGCACAGACTGTAGTTCAAGTGATTGATGTAATTTACTGTACAAAAGCACAACTGACCGTTGTCCACTGTTGTGAAgtaatgaggctgaattaacggAAGGAACAAGGAAAGCCAACAGTCAATATAGAGAGAACATttcaaaaataaaacatgtataagAAGCTACACTGTATAGCCTAATTCCCCAGGGAGAGACTGAACAAGATGAACACGGGACTTGGCaaagggagagggaaaagagagagagagaggagagagaatgaagggATGAAGAAGGGGCCTTTTAAGGCAACAGATCACAGAAAAATGTCCATTTTTAGTCCTAAGGAACCAGGGGGGAGTGAATACTAACCAGTCTGATGGGCGTGATAAGTAGATATTGAAACATGACCACATAACATTTTTGTGATCCACTGAAAGAGAGCATTTCTACTGTCTGTGCTGTGCTGAGTCACTGCggggagggaggtgtgtgtgccaTGGCCACCTGAAACAACTAGTAGctggacaaacacacatacagtacagtacagtcataGGCCAAAATCACACATTATCCcctagtgcactccttttgatcaGGGTCTATTAGgttatggtcaaaagtagtgtactatgtagggcatgtggtgtcatttgggacacagacacgaagtttgataggcctactgtacaaCATACTGAAAGGAAGAGAGTGGGATGTAGATATACATTACCATGATAACAACTCCTTAAACCAGCTTTATCTAATATGTTTAGGGTCTGACACCCATAGACTTGCCATAAACATTCACACTAGCTCATGATTCCTAATAGCAATCTATGTATTCACAAGGAGTTGCAGTGCATACTCACACAGG

Function

NR:

description
tubulointerstitial nephritis antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1792104 True 1786 TUCP 0.48 6 58364256 58377006

Neighbor

gene id symbol gene type direction distance location
LOC110496954 LOC106588892 coding upstream 26180 58326130 ~ 58338076 (+)
LOC110496595 LOC106588888 coding upstream 151698 58188792 ~ 58212558 (+)
LOC110496594 LOC106588886 coding upstream 176472 58182477 ~ 58187784 (+)
LOC110496868 LOC106588864 coding upstream 223637 58065484 ~ 58140619 (+)
LOC110496592 LOC106588883 coding upstream 428959 57893854 ~ 57935297 (+)
LOC118941193 NA coding downstream 1689 58378682 ~ 58383251 (+)
LOC118941195 NA coding downstream 6309 58383315 ~ 58384050 (+)
LOC118941196 NA coding downstream 7097 58384103 ~ 58384651 (+)
LOC118941194 NA coding downstream 8290 58379624 ~ 58386065 (+)
LOC110496610 aunip coding downstream 360343 58737349 ~ 58739567 (+)
G1566443 NA non-coding upstream 11775 58349530 ~ 58352481 (+)
G1566440 NA non-coding upstream 20315 58343656 ~ 58343941 (+)
G1566439 NA non-coding upstream 21548 58342440 ~ 58342708 (+)
G1566416 NA non-coding upstream 55377 58307177 ~ 58308879 (+)
G1566362 NA non-coding upstream 197053 58166996 ~ 58167203 (+)
G1566457 NA non-coding downstream 1211 58378217 ~ 58379396 (+)
G1567094 NA non-coding downstream 60711 58437717 ~ 58438457 (+)
G1567095 NA non-coding downstream 64896 58441902 ~ 58445013 (+)
G1566224 tbc1d5 other upstream 417493 57941097 ~ 57946763 (+)
LOC110496591 LOC106588881 other upstream 501210 57851179 ~ 57870361 (+)
LOC110496571 hoxa7aa other upstream 1252293 57109128 ~ 57112335 (+)
G1565672 NA other upstream 1332293 57031621 ~ 57031963 (+)
LOC110496618 LOC106588914 other downstream 493893 58864013 ~ 58873692 (+)
dlx5a dlx5 other downstream 580115 58957121 ~ 58959671 (+)
sem1 shfm1 other downstream 647974 59024919 ~ 59035388 (+)
G1567716 asb4 other downstream 932978 59309984 ~ 59312723 (+)
G1567804 col1a2 other downstream 1124167 59501173 ~ 59585317 (+)

Expression


Co-expression Network