G1567505 (LOC106588919)


Basic Information

Item Value
gene id G1567505
gene name LOC106588919
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 58924301 ~ 58925552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1793389
TCCagtgctctgtcccctccccctCACCTTGAGAAGGTCCagtgctctgtcccctccccctCACCTTGAGAAGGTCCagtgctctgtcccctccccctCACCCTGAGAAGGTCCagtgctctgtcccctccccctCACCTTGAGAAGGTCCagtgctctgtcccctccccctCACCTTGAGAAGGTCCagtgctctgtcccctccccctCACCTTGAGAAGGTCCAGCACTGTCCCCTCACCCTGAGAAGGTCCAGTCCTCTGTCCCCTACCCCTCACCTTGAGAAGGTCCTGCgctcccttccctccccctcacctTGAGAAGGTCCTGCGCGCGCGcgctccctccccctcaccttgAGAATGTccagtgctcagtcccctccttcctcttctcctccagtgTGAGGAACACCTTCTGCATGGTCTCTGTCGTCTCTGTCACGTTCAGGTAGTCCGCCCTCACCACCTGCAAGTCCTCCAAGGCCTGCTGTTTAAACGAGGCTGAAGTTCCCCCTTCTACCACCACCTCGCTGGCCAGGGACACCGCCTGCAGGGCCGCCCTATTCTGGAGCACCAGCAGACGAGACTGCTCAAACTCCTCCGGCCCGGCGATGTCGTCCCAGCAGACTGGGGAGGCAGAGGGCAGCCAGAAGCGCTGGGAGCAGTTGACAGGATTCCCCGGAGTCTCTGTCACAAATGGGCTGTCGGCGGGGAAGCTGTGGAGTAGATCCTGAAGGTTGAAGGAACCGGAGCCCCACTCCCAGTCTCCCTGCATGGGCTCCCCTGACTCAGGGTCGGGCGTGGGTCCCACCTCTGCCCCCACCGGGCACCAGGCACTCAGGAGGCAACAGGAGAGGCAGAGCCAAGCCCAGCTAGTTGTTCCATCGTGGAGCCACTTCATCACAATGTAGCTGGACTAGTCTTGTTCCCCAGCAGTGTGTCTATTAGCCTGGCAAGCAA

Function

NR:

description
uncharacterized protein LOC110496621

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1793389 True 962 lncRNA 0.62 3 58924301 58925552

Neighbor

gene id symbol gene type direction distance location
chrc1 chrc1 coding upstream 2282 58918319 ~ 58922019 (+)
LOC110496619 catsper4 coding upstream 8902 58906505 ~ 58915399 (+)
LOC110496618 LOC106588914 coding upstream 50609 58864013 ~ 58873692 (+)
nanos2 LOC106588910 coding upstream 100372 58823202 ~ 58823929 (+)
LOC110496610 aunip coding upstream 184734 58737349 ~ 58739567 (+)
trnaa-ugc-140 NA coding downstream 19709 58945261 ~ 58945334 (+)
dlx5a dlx5 coding downstream 31585 58957121 ~ 58959671 (+)
sem1 shfm1 coding downstream 99367 59024919 ~ 59035388 (+)
LOC110496872 slc25a13 coding downstream 132974 59058526 ~ 59156295 (+)
pdk4 LOC106588934 coding downstream 358108 59283660 ~ 59298606 (+)
G1567522 NA non-coding upstream 21810 58890403 ~ 58902491 (+)
G1567516 NA non-coding upstream 46841 58877027 ~ 58877460 (+)
G1567515 NA non-coding upstream 54291 58869481 ~ 58870010 (+)
G1567475 NA non-coding upstream 102745 58821236 ~ 58821556 (+)
G1567397 NA non-coding upstream 182456 58739746 ~ 58741845 (+)
G1567503 NA non-coding downstream 4021 58929573 ~ 58930215 (+)
G1567543 NA non-coding downstream 35690 58961242 ~ 58976415 (+)
G1567555 NA non-coding downstream 62496 58988048 ~ 58988650 (+)
G1567653 NA non-coding downstream 263901 59189453 ~ 59189762 (+)
G1567707 NA non-coding downstream 395789 59321341 ~ 59322412 (+)
G1566445 LOC106588893 other upstream 547295 58364256 ~ 58377006 (+)
G1566224 tbc1d5 other upstream 977538 57941097 ~ 57946763 (+)
LOC110496592 LOC106588883 other upstream 1003655 57893854 ~ 57935297 (+)
LOC110496591 LOC106588881 other upstream 1061255 57851179 ~ 57870361 (+)
G1567716 asb4 other downstream 384432 59309984 ~ 59312723 (+)
G1567804 col1a2 other downstream 575621 59501173 ~ 59585317 (+)
LOC110496636 bet1 other downstream 719161 59644659 ~ 59647881 (+)

Expression


Co-expression Network