Gene
RNA
| Item | Value |
|---|---|
| gene id | G1567944 |
| gene name | shfm1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 59025022 ~ 59035338 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| shfm1 | 26 proteasome complex subunit DSS1 |
| description |
|---|
| PREDICTED: 26S proteasome complex subunit DSS1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1793957 | True | 390 | lncRNA | 0.44 | 3 | 59025022 | 59035338 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dlx6a | dlx6 | coding | downstream | 58891 | 58962944 ~ 58966131 (-) |
| ago2 | LOC106570475 | coding | downstream | 72530 | 58934268 ~ 58952492 (-) |
| si:ch211-57n23.1 | LOC106588919 | coding | downstream | 98534 | 58922028 ~ 58926488 (-) |
| LOC110496620 | LOC106588918 | coding | downstream | 106972 | 58915161 ~ 58918050 (-) |
| LOC110496617 | LOC106588916 | coding | downstream | 118851 | 58877846 ~ 58906171 (-) |
| LOC110496627 | LOC106588646 | coding | upstream | 25005 | 59060343 ~ 59060911 (-) |
| LOC118940999 | NA | coding | upstream | 128236 | 59163574 ~ 59281264 (-) |
| asb4 | asb4 | coding | upstream | 258899 | 59294237 ~ 59320224 (-) |
| ppp1r9a | ppp1r9a | coding | upstream | 287286 | 59322624 ~ 59441836 (-) |
| casd1 | casd1 | coding | upstream | 437830 | 59473168 ~ 59487287 (-) |
| G1567913 | NA | non-coding | downstream | 46548 | 58978260 ~ 58978474 (-) |
| G1567889 | NA | non-coding | downstream | 92381 | 58927864 ~ 58932641 (-) |
| G1567886 | NA | non-coding | downstream | 113172 | 58911489 ~ 58911850 (-) |
| G1567880 | NA | non-coding | downstream | 132856 | 58885908 ~ 58892166 (-) |
| G1567871 | LOC106588914 | non-coding | downstream | 152667 | 58870937 ~ 58873691 (-) |
| G1567979 | NA | non-coding | upstream | 54671 | 59090009 ~ 59090699 (-) |
| G1568021 | NA | non-coding | upstream | 132609 | 59167947 ~ 59168189 (-) |
| G1568027 | NA | non-coding | upstream | 144760 | 59180098 ~ 59180748 (-) |
| G1568035 | NA | non-coding | upstream | 159561 | 59194899 ~ 59273220 (-) |
| G1568121 | NA | non-coding | upstream | 334237 | 59369575 ~ 59371107 (-) |
| G1567875 | NA | other | downstream | 155015 | 58869363 ~ 58870007 (-) |
| G1567080 | NA | other | downstream | 613893 | 58410499 ~ 58411129 (-) |
| G1566972 | NA | other | downstream | 857325 | 58167384 ~ 58167697 (-) |
| G1566923 | NA | other | downstream | 946876 | 58074209 ~ 58078146 (-) |
| G1568017 | NA | other | upstream | 119690 | 59155028 ~ 59157044 (-) |
| LOC110496637 | gng11 | other | upstream | 693841 | 59712624 ~ 59738593 (-) |
| G1569198 | NA | other | upstream | 1206593 | 60241931 ~ 60251369 (-) |
| G1569258 | NA | other | upstream | 1313438 | 60348776 ~ 60350759 (-) |
| G1569277 | NA | other | upstream | 1344515 | 60379853 ~ 60389092 (-) |
