G1567804 (col1a2)


Basic Information

Item Value
gene id G1567804
gene name col1a2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59501173 ~ 59585317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1793769
CGCCAACATCATTTAATGATATTATCATTATAAAACATGAAAGCACTTTAGTCATTGAATGGTGTTTGGGAACATTGGACATGCTTTATTTCAGAACTTTTCACAATCGATTTAAACATCTCACATATACAAAATAGGTACAATAAACTTTGTGGTTTTTTtcttttgagagagagaggccgcCTAAAATCCattaaaaatggatgaaataatgTGCTGTCAGCATGAACACTGCATTGAAGGGGGAATTGAAGGAGAAAAATGGCTgaacaaaaacaaatcaaaacttCGAGacaaaaatgaacaaaaaaacgttttttttttaaacggtcaAAACCAGACAAACATCAGACCAGACTTAGGAAATTCCACCTGCTTAAAATGGGGTTAATCAGGGGGGGGACCTGTGCAAGACTCAGTCAATACAAAGAAACACAGTAAAAATGAGAGTGGTTTTCTGCTCCTACACAGCTGGATGTTTAGCACCATAGGTCTCTGCTTCAAGTAATTCAGCACCTTTGATACAGGACGGAGCTTGAAGCCGTAGAACTCTTAACTTCTAGGTTGTGGATCAGACAGGTTCTCaatatttttttcaaaaaaaaaacaggcatgaGGTAGCTTCAACctttttttgtaatatttttgTGGTTTTAAACCTCCTCATTGGAAGATATACAAAGACCACAAAGTGATGCATACGTTCAGCGTTTTTATTACActtcttttattttttacaaaatgaTGACATGTCCCACAACATGGTGTTTTCCCGCGTCTCTTTGGGCTGCTGTATTAATTTGCATTGCACAACGCTCTGTTCAGTCCATTGGTCCTCTCCGATAGAGCCCAGTTTAAGCAAGTGGATGCGCAGTGGAAAATCAGCATTCAGTATAAAAACAACACAGAAAGAAGGGCAGagattctttttttctttctctctttttttaatTTATCATAAGTCCATTTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGATGGGCAGGCGAGATGGTTTATTTGTTCTGTATTCAATGACTGTCTTGCTCCACTGGCCAGTGTGTCAGTGCAGCCATCCTCCAGAACGTTGAAAGTGAAGCGACTGTTGCCCTCGGCACTCAGCTCCACGTCGTTGGAGCCCTGCAGGAGCACGGCCTTCTTCAGGTTGCCGTTCTCGCCGTCCATGTACGCTACGCTGTTCTTGCAGTGGTACGTGATGTTCTGGGTGGCCTGGTTGGCCAGGAGACGCATGAAGGCCAGCTGAGTGGCCATGCTCTGGGGGCTCAGGGTCTCGTCATTGTACGCAACTCAGTACCACCGTTAATGGTCTCTCCGAACCAGACGTGCTTCTTGTTCTCAGAGCTCCTGTACCAGTTCTTGCGGGCGATGCTCTCTGGGTGAGGGTGGATGCAGGTGTGTCCGGTGGAGAAGTCGCAGTGGGCCTTGATGGCGTCAGCGATGCAGCCCTGGTTGGGGTCGATCCAGTAGAAACCTGCAGGGGAGGACAAGAACGAGACACATCGATTAGCACTGATAATACTAATAACACTATTATTAAT
>TU1793770
CGCCAACATCATTTAATGATATTATCATTATAAAACATGAAAGCACTTTAGTCATTGAATGGTGTTTGGGAACATTGGACATGCTTTATTTCAGAACTTTTCACAATCGATTTAAACATCTCACATATACAAAATAGGTACAATAAACTTTGTGGTTTTTTtcttttgagagagagaggccgcCTAAAATCCattaaaaatggatgaaataatgTGCTGTCAGCATGAACACTGCATTGAAGGGGGAATTGAAGGAGAAAAATGGCTgaacaaaaacaaatcaaaacttCGAGacaaaaatgaacaaaaaaacgttttttttttaaacggtcaAAACCAGACAAACATCAGACCAGACTTAGGAAATTCCACCTGCTTAAAATGGGGTTAATCAGGGGGGGGACCTGTGCAAGACTCAGTCAATACAAAGAAACACAGTAAAAATGAGAGTGGTTTTCTGCTCCTACACAGCTGGATGTTTAGCACCATAGGTCTCTGCTTCAAGTAATTCAGCACCTTTGATACAGGACGGAGCTTGAAGCCGTAGAACTCTTAACTTCTAGGTTGTGGATCAGACAGGTTCTCaatatttttttcaaaaaaaaaacaggcatgaGGTAGCTTCAACctttttttgtaatatttttgTGGTTTTAAACCTCCTCATTGGAAGATATACAAAGACCACAAAGTGATGCATACGTTCAGCGTTTTTATTACActtcttttattttttacaaaatgaTGACATGTCCCACAACATGGTGTTTTCCCGCGTCTCTTTGGGCTGCTGTATTAATTTGCATTGCACAACGCTCTGTTCAGTCCATTGGTCCTCTCCGATAGAGCCCAGTTTAAGCAAGTGGATGCGCAGTGGAAAATCAGCATTCAGTATAAAAACAACACAGAAAGAAGGGCAGagattctttttttctttctctctttttttaatTTATCATAAGTCCATTTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGATGGGCAGGCGAGATGGTTTATTTGTTCTGTATTCAATGACTGTCTTGCTCCACTGGCCAGTGTGTCTCTGCAGAGGTAGGACAAAAGGAGAAACCATGTATCAGAATAGTGCACCCACTCATTATATCAAATCGTGAAAACATACAAATGCTTCACTTACAATAATACCCTACAGTAGCCCATGATACTTTAAATAGTCAGGTTCCCAAATTCTTTCACTAACCAATAAGTTACAGAAAACTACCCTGAGCCTGAGTTAACCCTTCCACCATGCACTGCATCTATTTGTGTGAGTGAGCACAGAGAGAACAAACAAGGCTATTATCTAGACATTGCGGTGCAAATAGAAAGGGGACTTACAGTGCAGCCATCCTCCAGAACGTTGAAAGTGAAGCGACTGTTGCCCTCGGCACTCAGCTCCACGTCGTTGGAGCCCTGCAGGAGCACGGCCTTCTTCAGGTTGCCGTTCTCGCCGTCCATGTACGCTACGCTGTTCTTGCAGTGGTACGTGATGTTCTGGGTGGCCTGGTTGGCCAGGAGACGCATGAAGGCCAGCTGAGTGGCCATGCTCTGGGGGCTCAGGGTCTCGTCATTGTACGCAAACTTACCACCGTTAATGGTCTCTCCGAACCAGACGTGCTTCTTGTTCTCAGAGCTCCTGTACCAGTTCTTGCGGGCGATGCTCTCTGGGTGAGGGTGGATGCAGGTGTGTCCGGTGGAGAAGTCGCAGTGGGCCTTGATGGCGTCAGCGATGCAGCCCTGGTTGGGGTCGATCCAGTAGAAACCTGCAGGGGAGGACAAGAACGAGACACATCGATTAGCACTGATAATACTAATAACACTATTATTAAT
>TU1793771
CGCCAACATCATTTAATGATATTATCATTATAAAACATGAAAGCACTTTAGTCATTGAATGGTGTTTGGGAACATTGGACATGCTTTATTTCAGAACTTTTCACAATCGATTTAAACATCTCACATATACAAAATAGGTACAATAAACTTTGTGGTTTTTTtcttttgagagagagaggccgcCTAAAATCCattaaaaatggatgaaataatgTGCTGTCAGCATGAACACTGCATTGAAGGGGGAATTGAAGGAGAAAAATGGCTgaacaaaaacaaatcaaaacttCGAGacaaaaatgaacaaaaaaacgttttttttttaaacggtcaAAACCAGACAAACATCAGACCAGACTTAGGAAATTCCACCTGCTTAAAATGGGGTTAATCAGGGGGGGGACCTGTGCAAGACTCAGTCAATACAAAGAAACACAGTAAAAATGAGAGTGGTTTTCTGCTCCTACACAGCTGGATGTTTAGCACCATAGGTCTCTGCTTCAAGTAATTCAGCACCTTTGATACAGGACGGAGCTTGAAGCCGTAGAACTCTTAACTTCTAGGTTGTGGATCAGACAGGTTCTCaatatttttttcaaaaaaaaaacaggcatgaGGTAGCTTCAACctttttttgtaatatttttgTGGTTTTAAACCTCCTCATTGGAAGATATACAAAGACCACAAAGTGATGCATACGTTCAGCGTTTTTATTACActtcttttattttttacaaaatgaTGACATGTCCCACAACATGGTGTTTTCCCGCGTCTCTTTGGGCTGCTGTATTAATTTGCATTGCACAACGCTCTGTTCAGTCCATTGGTCCTCTCCGATAGAGCCCAGTTTAAGCAAGTGGATGCGCAGTGGAAAATCAGCATTCAGTATAAAAACAACACAGAAAGAAGGGCAGagattctttttttctttctctctttttttaatTTATCATAAGTCCATTTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGATGGGCAGGCGAGATGGTTTATTTGTTCTGTATTCAATGACTGTCTTGCTCCACTGGCCAGTGTGTCAGTGCAGCCATCCTCCAGAACGTTGAAAGTGAAGCGACTGTTGCCCTCGGCACTCAGCTCCACGTCGTTGGAGCCCTGCAGGAGCACGGCCTTCTTCAGGTTGCCGTTCTCGCCGTCCATGTACGCTACGCTGTTCTTGCAGTGGTACGTGATGTTCTGGGTGGCCTGGTTGGCCAGGAGACGCATGAAGGCCAGCTGAGTGGCCATGCTCTGGGGGCTCAGGGTCTCGTCATTGTACGCAAACTGTGAAACAACATAGGAGGAATTAAGACAGGATCAGTGTCAAGATATAGTCTCAAGCATTTAGAAAAAAAACCTGGATGAAGAAGCGTATAGATAGATGTCTGATGCTCTCCCTAAAATGGAACCAATACAATCATGTTAAGGGTAGTGGATATTAATGTAAGCCAAACATATGGTTCAATACTATACTAGTAAAACATGCCTCAAATCAGACTGGTGTGCCAATCAAATCAATGTGTCTTCCTGATGTTCAAACTGTCCGCTCGTCATTAGAATCAGTACAGGTTCAGTCTGCTCACCTCAGTACCACCGTTAATGGTCTCTCCGAACCAGACGTGCTTCTTGTTCTCAGAGCTCCTGTACCAGTTCTTGCGGGCGATGCTCTCTGGGTGAGGGTGGATGCAGGTGTGTCCGGTGGAGAAGTCGCAGTGGGCCTTGATGGCGTCAGCGATGCAGCCCTGGTTGGGGTCGATCCAGTAGAAACCTGCAGGGGAGGACAAGAACGAGACACATCGATTAGCACTGATAATACTAATAACACTATTATTAAT
>TU1793776
CGCCAACATCATTTAATGATATTATCATTATAAAACATGAAAGCACTTTAGTCATTGAATGGTGTTTGGGAACATTGGACATGCTTTATTTCAGAACTTTTCACAATCGATTTAAACATCTCACATATACAAAATAGGTACAATAAACTTTGTGGTTTTTTtcttttgagagagagaggccgcCTAAAATCCattaaaaatggatgaaataatgTGCTGTCAGCATGAACACTGCATTGAAGGGGGAATTGAAGGAGAAAAATGGCTgaacaaaaacaaatcaaaacttCGAGacaaaaatgaacaaaaaaacgttttttttttaaacggtcaAAACCAGACAAACATCAGACCAGACTTAGGAAATTCCACCTGCTTAAAATGGGGTTAATCAGGGGGGGGACCTGTGCAAGACTCAGTCAATACAAAGAAACACAGTAAAAATGAGAGTGGTTTTCTGCTCCTACACAGCTGGATGTTTAGCACCATAGGTCTCTGCTTCAAGTAATTCAGCACCTTTGATACAGGACGGAGCTTGAAGCCGTAGAACTCTTAACTTCTAGGTTGTGGATCAGACAGGTTCTCaatatttttttcaaaaaaaaaacaggcatgaGGTAGCTTCAACctttttttgtaatatttttgTGGTTTTAAACCTCCTCATTGGAAGATATACAAAGACCACAAAGTGATGCATACGTTCAGCGTTTTTATTACActtcttttattttttacaaaatgaTGACATGTCCCACAACATGGTGTTTTCCCGCGTCTCTTTGGGCTGCTGTATTAATTTGCATTGCACAACGCTCTGTTCAGTCCATTGGTCCTCTCCGATAGAGCCCAGTTTAAGCAAGTGGATGCGCAGTGGAAAATCAGCATTCAGTATAAAAACAACACAGAAAGAAGGGCAGagattctttttttctttctctctttttttaatTTATCATAAGTCCATTTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGATGGGCAGGCGAGATGGTTTATTTGTTCTGTATTCAATGACTGTCTTGCTCCACTGGCCAGTGCAGCCATCCTCCAGAACGTTGAAAGTGAAGCGACTGTTGCCCTCGGCACTCAGCTCCACGTCGTTGGAGCCCTGCAGGAGCACGGCCTTCTTCAGGTTGCCGTTCTCGCCGTCCATGTACGCTACGCTGTTCTTGCAGTGGTACGTGATGTTCTGGGTGGCCTGGTTGGCCAGGAGACGCATGAAGGCCAGCTGAGTGGCCATGCTCTGGGGGCTCAGGGTCTCGTCATTGTACGCAAACTTACCACCGTTAATGGTCTCTCCGAACCAGACGTGCTTCTTGTTCTCAGAGCTCCTGTACCAGTTCTTGCGGGCGATGCTCTCTGGGTGAGGGTGGATGCAGGTGTGTCCGGTGGAGAAGTCGCAGTGGGCCTTGATGTCTCTGCAGGTACGGGCGGGGTTCTTCTTGGAACCCTCGGGGGTGAGCAAGTTCTCGATCTGGGAGTTTAGGGACTTGATGGTGGCGTCCACCTCGTAGTCCTTGGCCCTGAGAGAGGGCTGGTCGGCTCTGTACTCATCGTATCCACCAGACTGATCGTATCCACCACCAGCGGGACCTGCGGGTCCGGGAAGACCAGGAGAGCCGGGGGGACCCTCAGGTCCGAGATGTCCAGGGGAACCACGGTGTCCAACAGGTCCGATAGCACCATGACCTCCAGCTCTACCATCCTTACCAGGGGGACCATGGGGTCCGGCAGGGCCCTAGAAACAAGCAGAGGGAGATGACAAGGACAGTTGTCAATACATGCCTTTTATCTGTCTAGTTGGAGGAAGATACAATGGAGGGAGTTTGATGTGGATAGCACAGGTTACTTACTCTGGGTCCAGCAGGTCCAGTGATACCAGCAGAGCCAGTCTCACCAGATGGTCCCTGTTGGTCCGGGCATTCCCTGGAGACCACCATGTCCACGCAGACCCTTCATGCCTCTGTCTCCTTTCTCTCCAGCCCCACCCTTCTCTCCACGGGGACCAGCGGGGCCCTACAACACAAGGAGACAGAACCATAACAGACATGCGTTATTTCATATCGACCTACAGTATAGGCACAATTAGGCTACAGCGATGTAT
>TU1793780
CGCCAACATCATTTAATGATATTATCATTATAAAACATGAAAGCACTTTAGTCATTGAATGGTGTTTGGGAACATTGGACATGCTTTATTTCAGAACTTTTCACAATCGATTTAAACATCTCACATATACAAAATAGGTACAATAAACTTTGTGGTTTTTTtcttttgagagagagaggccgcCTAAAATCCattaaaaatggatgaaataatgTGCTGTCAGCATGAACACTGCATTGAAGGGGGAATTGAAGGAGAAAAATGGCTgaacaaaaacaaatcaaaacttCGAGacaaaaatgaacaaaaaaacgttttttttttaaacggtcaAAACCAGACAAACATCAGACCAGACTTAGGAAATTCCACCTGCTTAAAATGGGGTTAATCAGGGGGGGGACCTGTGCAAGACTCAGTCAATACAAAGAAACACAGTAAAAATGAGAGTGGTTTTCTGCTCCTACACAGCTGGATGTTTAGCACCATAGGTCTCTGCTTCAAGTAATTCAGCACCTTTGATACAGGACGGAGCTTGAAGCCGTAGAACTCTTAACTTCTAGGTTGTGGATCAGACAGGTTCTCaatatttttttcaaaaaaaaaacaggcatgaGGTAGCTTCAACctttttttgtaatatttttgTGGTTTTAAACCTCCTCATTGGAAGATATACAAAGACCACAAAGTGATGCATACGTTCAGCGTTTTTATTACActtcttttattttttacaaaatgaTGACATGTCCCACAACATGGTGTTTTCCCGCGTCTCTTTGGGCTGCTGTATTAATTTGCATTGCACAACGCTCTGTTCAGTCCATTGGTCCTCTCCGATAGAGCCCAGTTTAAGCAAGTGGATGCGCAGTGGAAAATCAGCATTCAGTATAAAAACAACACAGAAAGAAGGGCAGagattctttttttctttctctctttttttaatTTATCATAAGTCCATTTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCTTGATCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGATGGGCAGGCGAGATGGTTTATTTGTTCTGTATTCAATGACTGTCTTGCTCCACTGGCCAGTGCAGCCATCCTCCAGAACGTTGAAAGTGAAGCGACTGTTGCCCTCGGCACTCAGCTCCACGTCGTTGGAGCCCTGCAGGAGCACGGCCTTCTTCAGGTTGCCGTTCTCGCCGTCCATGTACGCTACGCTGTTCTTGCAGTGGTACGTGATGTTCTGGGTGGCCTGGTTGGCCAGGAGACGCATGAAGGCCAGCTGAGTGGCCATGCTCTGGGGGCTCAGGGTCTCGTCATTGTACGCAAACTGTGAAACAACCTCAGTACCACCGTTAATGGTCTCTCCGAACCAGACGTGCTTCTTGTTCTCAGAGCTCCTGTACCAGTTCTTGCGGGCGATGCTCTCTGGGTGAGGGTGGATGCAGGTGTGTCCGGTGGAGAAGTCGCAGTGGGCCTTGATGGCGTCAGCGATGCAGCCCTGGTTGGGGTCGATCCACCAGGACACACGACACGGACGACTATCTCCAATTGGAGAAACACGCTGGTGGGCTAAGGATAGTGCTTTGAAGAAGGTCTTTGGATCCTTTGGAAAACCAGACCAGGGTCTCTATGTTGAAGTACTCCTCACACTATCAGCCATACAAGGACAGGCCAACCTG

Function

symbol description
col1a2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within response to mechanical stimulus and skeletal system development. Predicted to be located in extracellular region. Predicted to be part of collagen type I trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including cranium; integument; myoseptum; osteoblast; and pectoral fin. Used to study Ehlers-Danlos syndrome and osteogenesis imperfecta. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome (multiple); heart valve disease; intracranial aneurysm; osteogenesis imperfecta (multiple); and osteoporosis. Orthologous to human COL1A2 (collagen type I alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(I) chain isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1793769 False 1607 lncRNA 0.43 3 59501173 59503373
TU1793770 False 1899 lncRNA 0.43 2 59501173 59503373
TU1793771 False 1907 lncRNA 0.43 2 59501173 59503373
TU1793776 False 2176 lncRNA 0.47 6 59501173 59504865
TU1793780 True 1700 TUCP 0.44 4 59501173 59585317

Neighbor

gene id symbol gene type direction distance location
sgce sgce coding upstream 29001 59439776 ~ 59472172 (+)
pdk4 LOC106588934 coding upstream 202567 59283660 ~ 59298606 (+)
LOC110496872 slc25a13 coding upstream 344878 59058526 ~ 59156295 (+)
sem1 shfm1 coding upstream 465785 59024919 ~ 59035388 (+)
dlx5a dlx5 coding upstream 541502 58957121 ~ 58959671 (+)
LOC110496636 bet1 coding downstream 139794 59644659 ~ 59647881 (+)
LOC100305210 tfpi2 coding downstream 198827 59703692 ~ 59709295 (+)
LOC110496635 NA coding downstream 242785 59747650 ~ 59753905 (+)
LOC110496640 LOC106588943 coding downstream 265118 59769983 ~ 59851172 (+)
cdk6 cdk6 coding downstream 751842 60256707 ~ 60351422 (+)
G1567764 NA non-coding upstream 76186 59424235 ~ 59424987 (+)
G1567707 NA non-coding upstream 178761 59321341 ~ 59322412 (+)
G1567653 NA non-coding upstream 311411 59189453 ~ 59189762 (+)
G1567555 NA non-coding upstream 512523 58988048 ~ 58988650 (+)
G1567808 NA non-coding downstream 11601 59516466 ~ 59520161 (+)
G1567805 NA non-coding downstream 16089 59520954 ~ 59543221 (+)
G1568244 NA non-coding downstream 97418 59602283 ~ 59648312 (+)
G1568302 NA non-coding downstream 191900 59696765 ~ 59738580 (+)
G1568310 NA non-coding downstream 205979 59710844 ~ 59757414 (+)
G1567716 asb4 other upstream 188450 59309984 ~ 59312723 (+)
LOC110496618 LOC106588914 other upstream 627483 58864013 ~ 58873692 (+)
G1566445 LOC106588893 other upstream 1124167 58364256 ~ 58377006 (+)
G1568568 NA other downstream 399299 59904164 ~ 59905204 (+)
G1569099 NA other downstream 1105083 60609948 ~ 60616294 (+)
G1568373 NA non-coding downstream 236059 59821376 ~ 59822173 (+)
G1568384 NA non-coding downstream 259829 59845146 ~ 59845375 (+)

Expression


Co-expression Network