G1568564 (LOC100136012)


Basic Information

Item Value
gene id G1568564
gene name LOC100136012
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 59901549 ~ 59901857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1794659
gtttagaccaaaaagctctatttttgtctcatcagaccacatgaccttctcccattcctcctctggatcatctagatggtcattggcaaacttcagacgggcctggacatgtgctggcttgagcagggggaccttgcgtgcgctgcaggattttaatccatgacggcgtagtgtgttactaatggttttctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgatcattgatgccccacgaggtgagatcttgcatgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1794659 True 309 lncRNA 0.50 1 59901549 59901857

Neighbor

gene id symbol gene type direction distance location
LOC110496640 LOC106588943 coding upstream 50377 59769983 ~ 59851172 (+)
LOC110496635 NA coding upstream 147644 59747650 ~ 59753905 (+)
LOC100305210 tfpi2 coding upstream 192254 59703692 ~ 59709295 (+)
LOC110496636 bet1 coding upstream 253668 59644659 ~ 59647881 (+)
sgce sgce coding upstream 429377 59439776 ~ 59472172 (+)
cdk6 cdk6 coding downstream 354850 60256707 ~ 60351422 (+)
LOC110496955 LOC106588949 coding downstream 454093 60355950 ~ 60361942 (+)
LOC110496647 LOC106588950 coding downstream 466248 60368105 ~ 60370534 (+)
efcab1 efcab1 coding downstream 468795 60370652 ~ 60372615 (+)
LOC118941198 pex1 coding downstream 473073 60374930 ~ 60401241 (+)
G1568506 NA non-coding upstream 45833 59855469 ~ 59855716 (+)
G1568385 NA non-coding upstream 54373 59846787 ~ 59847176 (+)
G1568384 NA non-coding upstream 56174 59845146 ~ 59845375 (+)
G1568373 NA non-coding upstream 79376 59821376 ~ 59822173 (+)
G1568598 NA non-coding downstream 47061 59948918 ~ 59950284 (+)
G1568612 NA non-coding downstream 60847 59962704 ~ 59963052 (+)
G1568615 NA non-coding downstream 64255 59966112 ~ 59966845 (+)
G1568617 NA non-coding downstream 68014 59969871 ~ 59970122 (+)
G1568621 NA non-coding downstream 76036 59977893 ~ 59978121 (+)
G1567804 col1a2 other upstream 316232 59501173 ~ 59585317 (+)
G1567716 asb4 other upstream 588826 59309984 ~ 59312723 (+)
sem1 shfm1 other upstream 866214 59024919 ~ 59035388 (+)
G1568568 NA other downstream 2307 59904164 ~ 59905204 (+)
G1569099 NA other downstream 708091 60609948 ~ 60616294 (+)
recql4 recql4 other downstream 2066091 61967906 ~ 61991797 (+)
G1571059 NA other downstream 2359767 62261624 ~ 62262217 (+)

Expression


Co-expression Network